Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O08
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   126   4e-30
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   111   1e-25
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   111   1e-25
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   111   1e-25
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   111   1e-25
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    70   5e-13
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    36   0.008
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    30   0.38 
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   6.1  

>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  126 bits (304), Expect = 4e-30
 Identities = 61/66 (92%), Positives = 64/66 (96%)
 Frame = +3

Query: 45  LSLYLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 224
           L L LRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 67  LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 126

Query: 225 EDGRTL 242
           EDGRTL
Sbjct: 127 EDGRTL 132



 Score =  126 bits (304), Expect = 4e-30
 Identities = 61/66 (92%), Positives = 64/66 (96%)
 Frame = +3

Query: 45  LSLYLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 224
           L L LRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 143 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 202

Query: 225 EDGRTL 242
           EDGRTL
Sbjct: 203 EDGRTL 208



 Score =  126 bits (304), Expect = 4e-30
 Identities = 61/66 (92%), Positives = 64/66 (96%)
 Frame = +3

Query: 45  LSLYLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 224
           L L LRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 219 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 278

Query: 225 EDGRTL 242
           EDGRTL
Sbjct: 279 EDGRTL 284



 Score =  126 bits (304), Expect = 4e-30
 Identities = 61/66 (92%), Positives = 64/66 (96%)
 Frame = +3

Query: 45  LSLYLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 224
           L L LRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL
Sbjct: 295 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 354

Query: 225 EDGRTL 242
           EDGRTL
Sbjct: 355 EDGRTL 360



 Score =  111 bits (268), Expect = 1e-25
 Identities = 53/56 (94%), Positives = 56/56 (100%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 242
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGGM
Sbjct: 57  SDYNIQKESTLHLVLRLRGGM 77



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGGM
Sbjct: 133 SDYNIQKESTLHLVLRLRGGM 153



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGGM
Sbjct: 209 SDYNIQKESTLHLVLRLRGGM 229



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGGM
Sbjct: 285 SDYNIQKESTLHLVLRLRGGM 305



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGG+
Sbjct: 361 SDYNIQKESTLHLVLRLRGGL 381


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  111 bits (268), Expect = 1e-25
 Identities = 53/56 (94%), Positives = 56/56 (100%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 242
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGG+
Sbjct: 57  SDYNIQKESTLHLVLRLRGGI 77


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  111 bits (268), Expect = 1e-25
 Identities = 53/56 (94%), Positives = 56/56 (100%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 242
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGGM 306
           SDYNIQKESTLHLVLRLRGG+
Sbjct: 57  SDYNIQKESTLHLVLRLRGGI 77


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  111 bits (268), Expect = 1e-25
 Identities = 53/56 (94%), Positives = 56/56 (100%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 242
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGG 303
           SDYNIQKESTLHLVLRLRGG
Sbjct: 57  SDYNIQKESTLHLVLRLRGG 76


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  111 bits (268), Expect = 1e-25
 Identities = 53/56 (94%), Positives = 56/56 (100%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 242
           MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 244 SDYNIQKESTLHLVLRLRGG 303
           SDYNIQKESTLHLVLRLRGG
Sbjct: 57  SDYNIQKESTLHLVLRLRGG 76


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 29/54 (53%), Positives = 42/54 (77%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 236
           M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDK 54



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 DAPCSDYNIQKESTLHLVLRLRGG 303
           D     Y+++  S LHLVL LRGG
Sbjct: 53  DKNAESYHLEGGSVLHLVLALRGG 76


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +3

Query: 102 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 230
           GK   LE+E ++T   +K ++     +PP++Q++I  G QL+D
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKD 52


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLLRLQ 254
           + + +K    +   + V++  ++  +K  I     I  ++QRLI+AG+ L+D  +L   +
Sbjct: 4   ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63

Query: 255 YSKG 266
              G
Sbjct: 64  IQDG 67


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 12  LPTHYREFLKILSLYLRLRGGMQIFVKTLTGKTITLEVEASD 137
           LP  Y EF KIL +Y      ++  +K++   +  L+  A D
Sbjct: 184 LPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADD 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,257
Number of Sequences: 5004
Number of extensions: 48557
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)