Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_O04
(957 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 39 0.007
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.083
10_01_0274 - 2901033-2901778,2902475-2902634 32 0.59
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 31 1.8
06_01_0145 + 1092764-1093351 30 3.1
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 4.1
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 4.1
07_03_0560 + 19479597-19480667 29 5.5
06_01_0178 + 1386981-1387505 29 7.2
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 28 9.6
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 9.6
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 9.6
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 38.7 bits (86), Expect = 0.007
Identities = 28/71 (39%), Positives = 28/71 (39%)
Frame = -2
Query: 953 GGVLGPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGCPX 774
GG LG P G GG P G GG P P G GG GL GG G P
Sbjct: 166 GGALGRPPGGGGGGGGP---GRAPGGGGGGGGPGRAPGGGGGGG---GLGGGGGEGGAPE 219
Query: 773 XGAXHGGXGGG 741
GG GGG
Sbjct: 220 RVIGGGGGGGG 230
Score = 29.5 bits (63), Expect = 4.1
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = -2
Query: 926 GXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGCPXXGAXHGGXG 747
G GG G GG E EG GG G GG G P G GG G
Sbjct: 267 GGGGGTDRNKGGGGGGGGALENAREDGAEGGGGG----GGGGGGGGHGAPELGFSGGGGG 322
Query: 746 GG 741
GG
Sbjct: 323 GG 324
Score = 28.3 bits (60), Expect = 9.6
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Frame = -2
Query: 941 GPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGC---PXX 771
G PPG GG PP GG P P G GG + + GG G P
Sbjct: 105 GARPPGGGGGGGPPSLPPGAGGGGGARPP--APGGGGGGGAPRRVLGGGGGGGALARPPG 162
Query: 770 GAXHGGXG 747
G G G
Sbjct: 163 GGRGGALG 170
Score = 28.3 bits (60), Expect = 9.6
Identities = 24/71 (33%), Positives = 26/71 (36%)
Frame = -2
Query: 953 GGVLGPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGCPX 774
GG P P G GG P GG P P G +GG + GG G P
Sbjct: 128 GGARPPAPGGGGGGGAPRRVLGGGGGGGALARP---PGGGRGG-ALGRPPGGGGGGGGPG 183
Query: 773 XGAXHGGXGGG 741
GG GGG
Sbjct: 184 RAPGGGGGGGG 194
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.083
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 825 PPFXPLRXXPXPXLSKXPPXPXXXXGGXXPSPXTXGGGSQNPP 953
PP P + P P +K PP P G P P GG PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 825 PPFXPLRXXPXPXLSKXP-PXPXXXXGGXX--PSPXTXGGGSQNPP 953
PP P + P P K P P P GG P P GG+ PP
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +3
Query: 825 PPFXPLRXXPXPXLSKXPPXPXXXXGGXXPSPXTXGGGSQNPP 953
PP P + P P K PP P G P P G S PP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKG--PPPPPPPKGPSPPPP 367
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 32.3 bits (70), Expect = 0.59
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = +1
Query: 754 PPWXAPXXGHPLXQTPPXNP--XKLXPPFXPSGKXLGXXSQXXPPXRXPXXGGXXP 915
PP AP G P + PP P P PS G + PP P G P
Sbjct: 222 PPTPAPECGQPAPEYPPSTPAYGTPAPECPPSTPEYGTPATACPPPTAPGYGSPSP 277
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 424 PPPPGXKAVGXWGXLPVXPPXXPYPPG 504
PPPPG A WG P P PPG
Sbjct: 425 PPPPGSYAPVPWGQPPPYASYPPPPPG 451
>06_01_0145 + 1092764-1093351
Length = 195
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 845 PEGXKGGXSXFGLXGGVWXKGCPXXGAXHGGXGG 744
P G KGG GGV KG P GG GG
Sbjct: 94 PRGGKGGAGGNAGPGGVGGKGGPGGDGGPGGIGG 127
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 596 PXGHQRAXTXKTGPLXGXXPKGPAPPXGAXXKSAP 700
P H RA T P P+ P PP A +AP
Sbjct: 728 PAPHLRARRVPTAPPAAARPRAPTPPAAAAAPAAP 762
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 424 PPPPGXKAVGXWGXLPVXPPXXPYPPGXXXAXXXXXXPXGGHAVTXXXXG 573
PPPP + G G P PP P PP P GG + G
Sbjct: 1184 PPPPPPRGHGGVGGPPT-PPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
>07_03_0560 + 19479597-19480667
Length = 356
Score = 29.1 bits (62), Expect = 5.5
Identities = 23/71 (32%), Positives = 25/71 (35%)
Frame = -2
Query: 953 GGVLGPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGCPX 774
GG G G GG G GG G KGG G+ GG +G
Sbjct: 65 GGFGGDGGFGGGGGGGLGGGGGFGGGGGAGGGGGLGGGGGKGGGFGGGVGGGGGGEGGGL 124
Query: 773 XGAXHGGXGGG 741
G GG GGG
Sbjct: 125 GGGGGGGLGGG 135
>06_01_0178 + 1386981-1387505
Length = 174
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 839 GXKGGXSXFGLXGGVWXKGCPXXGAXHGGXGGG 741
G GG G GG KG HGG GGG
Sbjct: 40 GGGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGG 72
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 409 QAXRNPPPPGXKAVGXWGXLPVXPPXXPYPPG 504
Q +PPPPG V P+ PP P PG
Sbjct: 239 QGFNSPPPPGQGPVLPRDAPPMPPPPSPPNPG 270
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 828 PFXPLRXXPXPXLSKXPPXPXXXXGGXXPSPXTXGGGSQNPP 953
P PL+ P P PP P P P + G G PP
Sbjct: 575 PMPPLKASPVPPPEPSPP-PAPKAAPPPPPPKSTGPGPPRPP 615
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +3
Query: 825 PPFXPLRXXPXPXLSKXPPXPXXXXGGXXPS-PXTXGGGSQNPP 953
PP P P P PP P G P P GG+Q PP
Sbjct: 264 PPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPP 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,730,110
Number of Sequences: 37544
Number of extensions: 287951
Number of successful extensions: 1042
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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