Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O04
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   4.9  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.5  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/59 (32%), Positives = 20/59 (33%)
 Frame = -2

Query: 953 GGVLGPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGCP 777
           GG   P PPG  G   PP      GG +    P   P G  G     G  G     G P
Sbjct: 250 GGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPP--GPPGPSGRPGAPGQPGPDGQPGAP 306


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/69 (31%), Positives = 22/69 (31%)
 Frame = -2

Query: 953 GGVLGPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKGGXSXFGLXGGVWXKGCPX 774
           GGV  P P G  G   P       GG       R  P G KG     G  G     G P 
Sbjct: 218 GGVGAPGPAGPRGAPGPAGHPGSSGGG------RPGPAGPKGAPGQPGRPGPDGHPGQPG 271

Query: 773 XGAXHGGXG 747
                GG G
Sbjct: 272 RPGQSGGSG 280


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +3

Query: 825 PPFXPLRXXPXPXLSKXPPXPXXXXGGXXPSPXTXGGGSQNPP 953
           PP       P P     PP P    GG  P P   GG    PP
Sbjct: 67  PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 24/72 (33%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
 Frame = -2

Query: 953 GGVLGPXPPGXXGGXXPPXXGXRXGGXF*EXXPRXXPEGXKG-GXSXFGLXGGVWXKGCP 777
           GG   P PP   GG      G   GG            G  G G    G  GG    GC 
Sbjct: 107 GGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGG--GGGCG 164

Query: 776 XXGAXHGGXGGG 741
             G   GG GGG
Sbjct: 165 GGGGGCGGGGGG 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,064
Number of Sequences: 27780
Number of extensions: 195919
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)