Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_O03
(990 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa... 39 0.001
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 38 0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.007
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.062
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.25
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.44
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.4
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 5.4
>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 129
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 353 HPLEASEKNYHLXEEKLNLAMLXNVQGLHAPMKITMERXFASTVGR 490
HPLE+ KN+ ++++ L + + GLH P++ ME+ AS R
Sbjct: 36 HPLESRLKNWEAQQQQIRLDSMRRIYGLHEPVRREMEQKLASQSSR 81
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/63 (31%), Positives = 23/63 (36%)
Frame = -1
Query: 882 GGXGXKGGERXXXGRGGGXXXPXXGGGEXAXGXGEXEXXGGEGGKXGGXXRXXXXGXGXG 703
G G +GG R G G GG A G G GG GG+ G G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Query: 702 GTR 694
G +
Sbjct: 66 GAK 68
Score = 35.9 bits (79), Expect = 0.009
Identities = 22/53 (41%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = -1
Query: 894 GGXXGGXGXKGGERXXXGRGGGXXXPXXG-GGEXAXGXGEXEXXGGEGGKXGG 739
GG GG G GG R RGGG G GG G GG GG GG
Sbjct: 19 GGFNGGRGGFGGGRGG-ARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 34.7 bits (76), Expect = 0.020
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -1
Query: 894 GGXXGGXGXKGGERXXXGRGGGXXXPXXGGGEXAXGXGEXEXXGGEGGKXGG 739
GG GG G G R G G G GG G GG GG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -1
Query: 819 PXXGGGEXAXGXGEXEXXGGEGGKXGGXXRXXXXGXGXGGTR 694
P GG G GG GG GG R G G GG R
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGG--RGGARGGGRGGAR 44
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 894 GGXXGGXGXKGGERXXXGRGGGXXXPXXGGGE 799
GG GG G +GG R G G GG +
Sbjct: 41 GGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.007
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Frame = +1
Query: 691 TSGXPTPXPXXXXPXXXPXLPPLXXPXLX--------LPXAXXLLPPSXXGXXXXPXPPX 846
TS P P P P P LPP P L LP + + PP G P P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 847 XXPLAPLXPLP 879
P P P P
Sbjct: 472 AAPAPPPAPAP 482
Score = 29.5 bits (63), Expect = 0.77
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 779 SPXPXAXSPPPXXGXXXPPPLPXXX-LSPPFXPXPPLXPP 895
+P S PP PP LP +PP P P+ PP
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +1
Query: 691 TSGXPTPXPXXXXPXXXPXL-PPLXXPXLXLPXAXXLLPPSXXGXXXXPXPPXXXPLAPL 867
++G PT P P PP P L P + PPS P P P+AP+
Sbjct: 220 SAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSP-PRPIAPV 278
Query: 868 XPLP 879
P
Sbjct: 279 SMNP 282
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXP-PLXP 892
P +PP G PPLP +PP P P P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +2
Query: 788 PXAXSPPPXXGXXXPPPLPX-XXLSPPFXPXPPLXPPXXNXVLXFPXXXGPSP 943
P + P G PPLP ++PP P PP P P+P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPPXXNXVL 913
P A +PPP PPP SPP P P+ P N +
Sbjct: 246 PSLSAPAPPPI-----PPPSNGTVSSPPNSPPRPIAPVSMNPAI 284
Score = 26.2 bits (55), Expect = 7.1
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = +1
Query: 688 LTSGXPTPXPXXXXPXXXPXLPPLXXPXLXLPXAXXLLPPSXXGXXXXPXPPXXXPLAPL 867
L G P P P P PPL +P A L PP+ P P P+A +
Sbjct: 439 LPMGAPAAPPL---PPSAPIAPPLPA---GMPAAPPL-PPAAPAPPPAPAPAPAAPVASI 491
Query: 868 XPLP 879
LP
Sbjct: 492 AELP 495
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXX-XLSPPFXPXPPLXPP 895
P +PP PPLP +PP P P PP
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.062
Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = -1
Query: 873 GXKGGERXXXGRGGGXXXPXXGG-GEXAXGXGEXEXXGGEGGKXGGXXRXXXXGXGXGG 700
G GG G G G P GG G GE GG GG GG G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
Score = 29.5 bits (63), Expect = 0.77
Identities = 22/65 (33%), Positives = 22/65 (33%)
Frame = -1
Query: 894 GGXXGGXGXKGGERXXXGRGGGXXXPXXGGGEXAXGXGEXEXXGGEGGKXGGXXRXXXXG 715
GG G G GG G GG GGE G GG GG GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGG---FGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244
Query: 714 XGXGG 700
G GG
Sbjct: 245 GGFGG 249
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.25
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPP-LPXXXLSPPFXPXPPL 886
P A +PPP PPP P PP P PPL
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Score = 29.9 bits (64), Expect = 0.58
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 773 SXSPXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPP 895
S P + PP PPP P PP P P PP
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.44
Identities = 20/52 (38%), Positives = 21/52 (40%)
Frame = -1
Query: 894 GGXXGGXGXKGGERXXXGRGGGXXXPXXGGGEXAXGXGEXEXXGGEGGKXGG 739
GG G G +GG R G GG GGG G G G GG GG
Sbjct: 138 GGRGGFRGGRGGSR---GGFGGNSRGGFGGGSRG-GFGGGSRGGSRGGFRGG 185
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Frame = -1
Query: 867 KGGERXXXGRGG-GXXXPXXGGGEXAXGXGEXEXXGGEG-GKXGGXXRXXXXGXGXGGTR 694
KG GRGG G GG G GG G GG R G GG+R
Sbjct: 128 KGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSR 187
Score = 26.6 bits (56), Expect = 5.4
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Frame = -2
Query: 878 GRGXRG----ARGXXXGGXGXXXNPXXEGGXRXXAXGRXXXGXXRGGXWGXXXG 729
GRG RG RG GG G GG R G G RGG G G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSR-GGFGGGSRGGSRGGFRGGSRG 188
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 779 SPXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPP 895
+P P PP PPP P ++ P PP PP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Frame = +2
Query: 803 PPPXXGXXXPPPLPXXXLSPPFXP---XPPLXPPXXNXVLXFPXXXGPSP 943
PPP P P P PP P PP PP P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Frame = +2
Query: 698 VPPXPXPXXXXLXXXXXXXXXXXXXSXSPXPXAXSP----PPXXGXXXPPPLPXXXLSPP 865
+PP P P + S P P PP PP+P ++ P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150
Query: 866 FXPXPPLXPPXXNXVLXFPXXXGPS 940
P P PP + P PS
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPS 1175
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/67 (25%), Positives = 25/67 (37%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPPXXNXVLXFPXXXGPSPXXLXXX 961
P P + + PP PP+P ++ P P P PP + P PS
Sbjct: 1105 PKP-SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163
Query: 962 TILNSPP 982
+ +PP
Sbjct: 1164 PSVAAPP 1170
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPPXXNXVLXFPXXXGPS 940
P P +PP PP+P P P P PP + P PS
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPPXXNXVLXFPXXXGPS 940
P P A PP PP+P + P P P PP P P+
Sbjct: 1182 PKPAA-GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = +2
Query: 773 SXSPX-PXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPP 895
S SP P A PP PP+P P P P PP
Sbjct: 1001 STSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPP 1042
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/67 (25%), Positives = 23/67 (34%)
Frame = +2
Query: 782 PXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXPPLXPPXXNXVLXFPXXXGPSPXXLXXX 961
P P P P PP +P ++ P P P PP + P PS
Sbjct: 1086 PAPSGIPPVPKPSVAAPP-VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144
Query: 962 TILNSPP 982
+ +PP
Sbjct: 1145 PSVAAPP 1151
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -1
Query: 936 GPXCXGKXRTXFXXGGXXGGXGXKGGERXXXGRGGGXXXPXXGGGEXAXG 787
G C T GG GG G GG GRGG G G G
Sbjct: 433 GRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 819 PXXGGGEXAXGXGEXEXXGGEGGKXG-GXXRXXXXGXGXGGTRS 691
P GGG G G GG GG+ G G R G G GG RS
Sbjct: 443 PRTGGGSRG-GRGGFGGRGGFGGRGGFGGGR----GRGRGGARS 481
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 830 PPPLPXXXLSPPFXPXPPLXP 892
PPP P PP P PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 779 SPXPXAXSPPPXXGXXXPPPLPXXXLSPPFXPXP 880
+P P +P P PPP +SP P P
Sbjct: 728 TPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,094
Number of Sequences: 5004
Number of extensions: 43024
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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