Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_O02
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 361 e-101
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 45 1e-05
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 44 4e-05
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 35 0.018
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 32 0.13
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 29 1.2
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 28 1.5
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 28 2.0
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 2.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.7
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 27 2.7
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 6.2
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 6.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.2
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 6.2
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.2
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 8.2
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.2
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 361 bits (888), Expect = e-101
Identities = 157/220 (71%), Positives = 195/220 (88%)
Frame = +1
Query: 142 FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 321
FK I +P F+D++LS+TQRKTPTV+ +KISRIRGFY RKVK+TQ ++L I
Sbjct: 6 FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65
Query: 322 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 501
+QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66 LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125
Query: 502 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFI 681
CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG+PNVGKSSF+
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFM 185
Query: 682 NKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 801
NK+TRA V+VQPYAFTTKSL+VGH DYKYLRWQVIDTPGI
Sbjct: 186 NKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGI 225
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 792 PWNLDHPLEERNV*KCKP-SQLXSLRAAILY 881
P LDHPLE+ N + + + + LR+A+LY
Sbjct: 223 PGILDHPLEQMNTIEMQSITAMAHLRSAVLY 253
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 634 TIIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 801
T+ GFP+VGKS+ + ++T E Y FTT + G Y + Q++D PGI
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGI 120
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 637 IIICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGI 801
+ GFP+VGKS+ ++ IT+ Y FTT + G +Y Q++D PGI
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGI 119
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 34.7 bits (76), Expect = 0.018
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +1
Query: 643 ICGFPNVGKSSFINKITRADVEVQPYAFTTKSLYVG------HTDYKYLRWQVIDTPGI 801
+ G PN GKS+ +N +T + +V Y FTT +G D+ ++++ D PGI
Sbjct: 241 LVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPGI 299
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 31.9 bits (69), Expect = 0.13
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +1
Query: 577 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRADV-EVQPYAFTTKS-LYVG 750
L Q+ + A L S D ++ + GFPN GKSS IN + + V V P TK YV
Sbjct: 294 LIQILRQFASLHS-DKKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPGETKVWQYVA 352
Query: 751 HTDYKYLRWQVIDTPGI 801
+L ID PGI
Sbjct: 353 LMKRIFL----IDCPGI 365
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 634 TIIICGFPNVGKSSFINKI 690
T+ + G+PNVGKSS IN +
Sbjct: 271 TVGVIGYPNVGKSSVINAL 289
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 562 ANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFINKITRA-DVEVQPYAFTTKS 738
A L LE + + A T + G+PNVGKSS IN + + V V TK
Sbjct: 279 ATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKTKH 338
Query: 739 LYVGHTDYKYLRWQVIDTPGI 801
+ K ++D PG+
Sbjct: 339 FQTINLSEKV---SLLDCPGL 356
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 643 ICGFPNVGKSSFINKITRA 699
I G PNVGKS+F IT++
Sbjct: 25 IVGMPNVGKSTFFRAITKS 43
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 505 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG 651
K LKR LG AT + GAN+ H P DP +T+++ G
Sbjct: 53 KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLG 98
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 148 KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 264
KI VV + + + S+ QRK +++ KH I + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 688 ITRADVEVQPYAFTTKSLYVGHTDYKYLRWQVIDTPGIWIIHWKNAMFRNA 840
IT +++Q Y + T +L +G Y +D P W+ ++ F A
Sbjct: 54 ITSFPLDLQSYTYYTTTLSIGRPSISYTVAIDLDMPYTWLTYYNVMAFNPA 104
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Frame = +1
Query: 124 KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 300
K++ FK IA + F+D +S R T + +++ GF +K + F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603
Query: 301 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 384
+ LS ++ + F K+DD + Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 244 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 423
+S IR R+ K + LSR I + KLD V PF +M +L D+ + + + L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492
Query: 424 NTARHLIDNV 453
T L+ NV
Sbjct: 493 ITITRLVSNV 502
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 637 IIICGFPNVGKSSFINKITRAD 702
++ICG VGKSS I+ + + D
Sbjct: 6 VVICGDQGVGKSSLISALIQED 27
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 649 GFPNVGKSSFINKITRADVEVQPYAFTT 732
G P+ GKS+ +N +T A + + FTT
Sbjct: 11 GKPSSGKSTMLNALTDATAKTGNFPFTT 38
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 669 FSDVWESTDDYRPGV 625
FS+VW+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 669 FSDVWESTDDYRPGV 625
FS+VW+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 669 FSDVWESTDDYRPGV 625
FS+VW+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,769
Number of Sequences: 5004
Number of extensions: 78936
Number of successful extensions: 244
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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