Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_O02
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   6.5  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 775 WQVIDTPGIWIIHWKN 822
           W V     +WI++W+N
Sbjct: 596 WYVPSLDQVWILNWRN 611


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 692 HVLMWKCSPMHLPQRVCMLVILITNI 769
           H ++  CS       +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 692 HVLMWKCSPMHLPQRVCMLVILITNI 769
           H ++  CS       +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 692 HVLMWKCSPMHLPQRVCMLVILITNI 769
           H ++  CS       +CML++L+ N+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANL 103


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 535 CDPEPHVSAVCTDT 494
           CD  P +S VC DT
Sbjct: 58  CDMSPLLSLVCADT 71


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 535 CDPEPHVSAVCTDT 494
           CD  P +S +C DT
Sbjct: 59  CDMSPSLSLLCADT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,735
Number of Sequences: 438
Number of extensions: 5346
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)