Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N24
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.57 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.75 
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   5.3  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   9.3  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 449 HSIPKNAITXITAPTTMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 288
           ++ P+N  T IT+PT +    P T+  V + S  +T    +  +TPI +SS   S+T
Sbjct: 362 NTTPENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +3

Query: 738 PTPPXPXSXNXXXLSAIIXXHXPPXSAXXXPPXXPXXAPPXHXXXPLP 881
           P PP P S      SA      PP S    PP  P  APP     P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPP-IPSKAPPIPSSLPPP 174


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 246 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 359
           +E  E+    L+P  RAPRP+ S    S   E+ H  R
Sbjct: 77  DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 359 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 231
           SL + +F +  T +    +P S T  +  NS+ FTK  P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,409
Number of Sequences: 5004
Number of extensions: 42663
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)