Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N24
         (975 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566...    31   1.8  
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    30   2.4  
12_02_0643 - 21461123-21461902                                         29   7.4  
06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737...    28   9.8  

>05_07_0066 +
           27453611-27453627,27454729-27454872,27455998-27456690,
           27457700-27458111,27458220-27458297,27458938-27458953,
           27459038-27459192
          Length = 504

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 459 GIAPQHPQERDHXHYSPDDYEDPRTDSKMGL 367
           G +P   +ERDH H+ P D  DP + S  G+
Sbjct: 144 GRSPARERERDHGHH-PSDISDPTSPSSTGV 173


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = -1

Query: 453 APQHPQERDHXHYSPDDYEDPRTDSKMGLQ*VFDHGPVHQERYSNPH*QQAEERDDQVEE 274
           AP H     H H+    +ED R  +         H PVH+ RY  P   +     D+ + 
Sbjct: 346 APMHHHGHHHHHHHHHGHEDSRHSAPAQAP---VHYPVHEPRYGAPPPSRCPYGTDKPKN 402

Query: 273 E*HIFHKTRSTSH 235
           + H+      T++
Sbjct: 403 KAHVMPAPEPTAN 415


>12_02_0643 - 21461123-21461902
          Length = 259

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = +2

Query: 518 PXGXXRPPSLN*XPEHPXHPSXIGXRRXTSKRXXPPTPXXAPPXXP 655
           P    RPPS    PE    PS +  R  T     PP P   PP  P
Sbjct: 193 PQSSRRPPSRTPPPERRESPSPLRGRPRT-----PPPPRPRPPTTP 233


>06_03_0923 -
           25972063-25972840,25973549-25973620,25973711-25973747,
           25973852-25973910,25974011-25974295,25974653-25974954,
           25974986-25975116,25975209-25975296
          Length = 583

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 364 LKTHLAVGPWIFIVVGAVMXVIAFLGMLWS 453
           ++T L     I IVV AVM  +AFLG+++S
Sbjct: 262 IRTALETIRTILIVVAAVMLALAFLGLVFS 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,405,856
Number of Sequences: 37544
Number of extensions: 395656
Number of successful extensions: 1569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)