Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N24
         (975 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    32   0.71 
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    32   0.71 
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    29   6.6  
U40061-3|AAO91697.1|  205|Caenorhabditis elegans Claudin-like in...    28   8.8  
U40061-2|AAA81150.1|  222|Caenorhabditis elegans Claudin-like in...    28   8.8  

>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 455 SLHSIPKNAITXITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIPTSSRPRSA 291
           S+H+   +A + +T P   K  G T     S S + VQF  N      S RPR A
Sbjct: 705 SVHATKSSAASLLTTPFVSKPQGITPTPSSSSSTSFVQFTPNTYSAVRSIRPRQA 759


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 455 SLHSIPKNAITXITAPTTMKIHGPTARWVFSKSLTMVQFIRNATPIPTSSRPRSA 291
           S+H+   +A + +T P   K  G T     S S + VQF  N      S RPR A
Sbjct: 705 SVHATKSSAASLLTTPFVSKPQGITPTPSSSSSTSFVQFTPNTYSAVRSIRPRQA 759


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -2

Query: 404 TMKIHGPTARWVFSKSLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPMLRA 225
           T  ++ PT+R   S  LTM Q  R A+   +++RP +AT     N     +  P PM R 
Sbjct: 210 TQSVYTPTSRPATSSRLTMKQPARGAS--TSAARPNTATPSSSNNRRSMDQRKP-PMPRK 266

Query: 224 LFF 216
           L F
Sbjct: 267 LPF 269


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -2

Query: 404 TMKIHGPTARWVFSKSLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPMLRA 225
           T  ++ PT+R   S  LTM Q  R A+   +++RP +AT     N     +  P PM R 
Sbjct: 200 TQSVYTPTSRPATSSRLTMKQPARGAS--TSAARPNTATPSSSNNRRSMDQRKP-PMPRK 256

Query: 224 LFF 216
           L F
Sbjct: 257 LPF 259


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -2

Query: 404 TMKIHGPTARWVFSKSLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPMLRA 225
           T  ++ PT+R   S  LTM Q  R A+   +++RP +AT     N     +  P PM R 
Sbjct: 200 TQSVYTPTSRPATSSRLTMKQPARGAS--TSAARPNTATPSSSNNRRSMDQRKP-PMPRK 256

Query: 224 LFF 216
           L F
Sbjct: 257 LPF 259


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 440 GCCGAIPXXHCMVVTXPISLLVII 511
           GCCGAI   +C+ V+  + L ++I
Sbjct: 70  GCCGAIRENYCLTVSFAVLLALLI 93


>U40061-3|AAO91697.1|  205|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 3, isoform b protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 370 THLAVGPWIFIVVGAVMXVIAFLGMLWS 453
           T L V  WI ++VG  M VIA +   WS
Sbjct: 6   TGLQVVSWILLLVGTGMLVIALISDYWS 33


>U40061-2|AAA81150.1|  222|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 3, isoform a protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 370 THLAVGPWIFIVVGAVMXVIAFLGMLWS 453
           T L V  WI ++VG  M VIA +   WS
Sbjct: 6   TGLQVVSWILLLVGTGMLVIALISDYWS 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,036
Number of Sequences: 27780
Number of extensions: 278427
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)