Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_N22
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 48 2e-06
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 1.1
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 27 4.3
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 4.3
SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2... 26 5.7
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 7.5
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 26 7.5
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 10.0
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 47.6 bits (108), Expect = 2e-06
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Frame = +3
Query: 213 VNCWFCNSNFWVKFIERNSWTCPKCEQYNGFTEDG---DYNKPIVNNVEETPKTPKVFQR 383
V C++CN ++WTC CE N E G DY P ++ P R
Sbjct: 27 VTCFYCNKKKEKIRDGTSTWTCSICEATNHIDEKGDILDYRPP--TPTQDKGVGPFYAIR 84
Query: 384 TLPNNG-----LCKMCNINQQLKVTQLANFVPMNE----KKYDEEIENYRLQLEKAYKL- 533
P++ C+ C +NQ + LA+++P + + Y++ + Y+ +E+ + +
Sbjct: 85 DFPSSSSFQSPFCEKCQMNQLIVNRMLADYLPDSSHPDYQAYEKALPEYKKSIEEKFPIV 144
Query: 534 CSPCKRVVQXKLN 572
CS C VQ +L+
Sbjct: 145 CSECYDSVQDQLD 157
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 342 NVEETPKTPKVFQRTLPNNGLCKMCNINQQLKVTQLANFVPMNEKKYDEEIENYR 506
N E+ T + + L N +C + N + ++ + + NE+K D EI+NY+
Sbjct: 82 NEEKESDTQTRYLKQLIN--ICNSPSKNHETSLSPSKSTIDNNERKLDNEIDNYK 134
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 262 RSINFTQKFELQNQQLTRHDNNNRKLYINLNIKVMHIADVI-KISID 125
R N+ QKF + NRK NL + V I +V+ +I +D
Sbjct: 62 RHFNWQQKFSNPKISASARKRRNRKARENLKVNVSSIGEVLPEIDLD 108
>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 217 LTRHDNNNRKLYINLNIKVMHIADVIKISIDSISCIF*YIRH-LFH 83
L R +N+N + I IK++ I+ + +I I I +F IRH +FH
Sbjct: 2 LVRENNSNDRSIIEYVIKILLISGISRIII-LILAMFESIRHIIFH 46
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 237 NFWVKFIERNS-WTCPKCEQYNGFTEDGDYNKPIVNN 344
N +++F +S WTC C N F +DG +N P+V +
Sbjct: 224 NPFIQFTMASSKWTCNLCGSENSFNDDG-FN-PLVGS 258
>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
L25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 465 MNEKKYDEEIENYRLQLEKAYKLCSPCKRVVQXKL 569
++E+K DE +EN RL+L ++ K S K KL
Sbjct: 103 ISERKRDEILENRRLKLSESLKKTSKFKNERVCKL 137
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 255 IERNSWTCPKCEQ--YNGFTEDGDYNKPIVNNVEET 356
I+ W C C Q YN F +++P+ N +ET
Sbjct: 145 IDLKYWYC-SCSQFSYNAFNSSRSFDEPMPKNEQET 179
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 214 TRHDNNNRKLYINLNIKVMH 155
T+HDNN L +N K++H
Sbjct: 59 TKHDNNTNNLMVNAYWKLIH 78
>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 10.0
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +3
Query: 288 EQYNGFTEDGDYNKP-IVNNVEETPKTPKVFQRTLPNNGLCKMCNINQQLKVTQLANFVP 464
+ ++ E + N P I +V P +CK N+++ + V QLA
Sbjct: 78 KNHSAAMEGVNINVPGIYRDVYPLPNEDVEMHEAKKKENICKKENLSKTVLVRQLAEIYF 137
Query: 465 MNEKKYDEEIENYRLQLEKAYK 530
N KY + +++A+K
Sbjct: 138 ANSNKYVVDENGLDDLIQQAFK 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,149
Number of Sequences: 5004
Number of extensions: 52365
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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