Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N21
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   4.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.3  

>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 721 SSQVCSPRWKTSTLPALSNVTPETWPS 641
           +S+    RW TS +P+LS + P ++ S
Sbjct: 17  NSERARNRWSTSHIPSLSEINPSSFQS 43


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +1

Query: 43  FEVSAGCVSEH------YTCIGHDGAYASFVECHLISREHFTSP 156
           F  + GC S+       Y  +G DG Y S  EC   SR  FT P
Sbjct: 139 FTTAQGCSSQAIPIVTAYETLGEDGIYTSLDECK--SRAIFTDP 180


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 129 KVTLYKTCIRPVMTYASVVFAHAARTHLKILRNSL 25
           ++ L  +C+  V +YA ++ AH+    L   +N+L
Sbjct: 2   RLVLLFSCVLAVSSYAEIILAHSDENLLSRTKNNL 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,700
Number of Sequences: 5004
Number of extensions: 68687
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)