Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N21
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    28   8.7  

>08_02_1023 -
           23710825-23710950,23711037-23711120,23711367-23711492,
           23711593-23711712,23712046-23712153,23712243-23712395,
           23712505-23712600,23712716-23712800,23713278-23714268,
           23714870-23714915,23715806-23715964,23716516-23716651,
           23716734-23716900,23717366-23717696,23717827-23718062,
           23718326-23718514
          Length = 1050

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 678 GRVLVFHRGEHTWDEHTFTNGNIYLGIGKPALQPKTI 788
           GR L F RG    D  T   G+  LGIG  AL+P T+
Sbjct: 299 GRGLEF-RGIRPGDMLTCQGGSAMLGIGPAALRPNTV 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,467,140
Number of Sequences: 37544
Number of extensions: 387936
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)