Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N21
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    39   0.004
U80024-8|AAK18887.3|  288|Caenorhabditis elegans Serpentine rece...    28   7.8  
AF067607-1|AAY86220.1|  342|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +3

Query: 636 ITLGQVSGVTLDNAGRVLVFHRGEHTWDEHTFTNGNIYLGIGKPALQP 779
           + LGQV+G+  +N  ++LVF R    WD  TF N NI L   KP   P
Sbjct: 355 VKLGQVAGLAFNNEQQLLVFQRAGRVWDASTFDNYNILLD-KKPIADP 401


>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 627 NISITLGQVSGVTLDNAGRVLVFHRGEHTWDEHTFTN 737
           N S  +GQVSG+ ++  G ++ FHR    WDE +F +
Sbjct: 54  NPSKEIGQVSGLAVNKNGHIVAFHRSGRVWDEKSFND 90


>U80024-8|AAK18887.3|  288|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 9 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 384 LFVDLLVSQTAYRYV--CVLYFFFNQQVHRQD*WI 286
           LF+DL  S  A  Y+  C+LY FF +++  Q  +I
Sbjct: 53  LFLDLAYSVLACAYMTFCILYSFFTEELREQQFFI 87


>AF067607-1|AAY86220.1|  342|Caenorhabditis elegans Hypothetical
           protein C18H7.10 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 462 FKVIVMILCLRKSIYVNGYG---ERDYFSDREDNNPAY 566
           F+ + +ILC+  +I+V GY    E  YF+  + N+P Y
Sbjct: 41  FRPVQVILCVAMTIFVFGYSFLREYFYFAVLDANSPKY 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,707,635
Number of Sequences: 27780
Number of extensions: 385279
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)