Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_N18
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 34 0.024
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 29 0.67
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 3.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 4.7
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 26 8.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 8.2
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 8.2
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 26 8.2
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 8.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 8.2
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 34.3 bits (75), Expect = 0.024
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 400 EWIIVLTGYNEGHSHQYPSVVLLIFSIVPTVVALMIEKGIAVNLINEKL-GVFLQITNIL 576
EW++ +TG+ +Y + ++ S+ V + AV ++ K G F Q + +
Sbjct: 303 EWLLDITGWGSASFPRYSHISVVAHSLGGLV------QTYAVGYVHAKTHGAFFQAIHPV 356
Query: 577 FIITLPAVVLQIKGNHFSFIG 639
F +TL L + G H S+IG
Sbjct: 357 FFVTLATPWLGVAGEHPSYIG 377
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 29.5 bits (63), Expect = 0.67
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 596 AGSVIINNILVICKNTPSFSFIKFTAIPFSIISATTVGTILNIS 465
A SV I N+L I P S + F SIIS T+G +LN S
Sbjct: 82 AKSVFILNMLAII---PLASLLSFATEQLSIISGPTLGALLNAS 122
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/52 (17%), Positives = 26/52 (50%)
Frame = -1
Query: 181 HFGLSYNEVSYLQFLSSFCDFLSSKIPNYQTSEHYFYQLLYLRDGTVQILRI 26
HF +SY +++++ + ++P + T Q++ D ++I+++
Sbjct: 452 HFPSINTSLSYSKYINALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQL 503
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = +1
Query: 118 RNHKMMTETEDKTLRYR-RAQSVTRAEEITEKEKKVRSSQLDKPIHKPRDSLFSWSSEFA 294
R ++++E E++ + + VT + E K D + + +
Sbjct: 1091 RRRRLLSEKEERRKELAIKIEQVTNSCSDLELRTNAEQDFYAKNQDFEFDEIKRYEEQLL 1150
Query: 295 NFTGLVNWGFLMLTVGGVRLCLEN 366
N + W + LT GG++L N
Sbjct: 1151 NLKNELGWTIVSLTAGGIKLATNN 1174
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 232 QLDKPIHKPRDSLFSWSSEFANF 300
Q D P + P +++F+ + +FANF
Sbjct: 98 QCDSPYNVPPENMFNQNPDFANF 120
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 184 TRAEEITEKEKKVRSSQLDKPIHKPRDSLFSWSSE-FANFTGLVNWGFLMLTVGGVRLCL 360
++A +I K+ S L + + F + S+ F L W L++ V L
Sbjct: 1336 SQAAKILNLLKEALESSLPERAGFEENRHFKYDSKYFLRIATLSAWASLLVHSANVSY-L 1394
Query: 361 ENFLKYGFRVNPIEWIIVLTGYN 429
+ FL R WI+ L GY+
Sbjct: 1395 KEFLSSNIRRLSSHWIMALRGYS 1417
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 395 GFTRKPYFKKFSRQSRTPPTVSIRKPQFTNPVKFANSELHENKE 264
G KP FS+ S TP T ++ +N VK + S + E+++
Sbjct: 10 GSAHKPTKPNFSKTSTTPSTSQLKHSHESN-VKMSTSTVTEHRK 52
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -3
Query: 380 PYFKKFSRQSRTPPTVSIRKPQFTNPVKFANS 285
P + R+ PP S+R+P+F + + +S
Sbjct: 134 PVLLSYKRREMLPPQPSVRRPRFYSSYSYPSS 165
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 136 TETEDKTLRYRRAQSVTRAEEITEKEKKVRSSQLDKPI 249
+E E K +Q + R EE+ K+ LDKPI
Sbjct: 168 SEEEQKLAIPITSQQMVRLEELWRKDPNANLEDLDKPI 205
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 115 LRNHKMMTETEDKTLRYRRAQSVTRAEEITEKEKKVRSSQ--LDKPI 249
LRN + + T R+ A + + + TEKEKK+ + + LDK I
Sbjct: 427 LRNDSKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKLI 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,186
Number of Sequences: 5004
Number of extensions: 56365
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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