Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N18
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    27   0.17 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.30 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   8.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   8.6  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +1

Query: 19  YRESLRFGRYRLLNKVIDKNNVR*FDNLEFYCLRNHKMMTETEDKTLRYRRAQSVTRAEE 198
           Y+E  R  RY  L+   +K          + C R  +  +   + + R  R  S  R+ +
Sbjct: 245 YKEKDR--RYEKLHNEKEKLLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRD 302

Query: 199 ITEKEK----KVRSSQLDKPIHKPRDSLFSWSSEFAN 297
            TE+E+    K+ SS  +K IH   +  +++++   N
Sbjct: 303 RTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYN 339



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 528 IHSNSFFNHKCNNGWYNTEYK*NN 457
           IH+N+ + +  NN  YN     NN
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNN 346


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -2

Query: 651 HRRSTDEAKMISFDLQNNSGQRDNKQYISYLQEHAKFFIY*IHSNSFFNHKCNNGWYNTE 472
           +R+  + +K  S D       ++ K  IS L  + K+  Y  ++N++ N+   N  YN  
Sbjct: 289 YRKYGETSKERSRDRTERERSKEPK-IISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNN 347

Query: 471 YK 466
           YK
Sbjct: 348 YK 349


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 189 TSDTLGSPITKCLIFS 142
           T D  G P T CL+FS
Sbjct: 138 TFDQTGIPPTTCLVFS 153


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 528 IHSNSFFNHKCNNGWYNTEYK 466
           IH+N+ + +  NN  YN   K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 528 IHSNSFFNHKCNNGWYNTEYK 466
           IH+N+ + +  NN  YN   K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 528 IHSNSFFNHKCNNGWYNTEYK 466
           IH+N+ + +  NN  YN   K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 528 IHSNSFFNHKCNNGWYNTEYK 466
           IH+N+ + +  NN  YN   K
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCK 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,543
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)