Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N15
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    29   1.2  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    28   1.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   2.0  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    28   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.2  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   8.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.2  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 729 AAPPCDAPGLLAGAATEFFPGLPA 658
           A PP   P +L   A + FPG+PA
Sbjct: 250 AVPPLSIPNVLPFTAAQHFPGMPA 273


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +2

Query: 83  HKYIQNHYRLIAKKCSLIAKLAS-----PKIFVYRILVCSYRGEANMVIEKLHGLQCHQY 247
           H+ IQ  Y  I   C   A+LA      P+IF   I   ++ G A M+ ++L G   + Y
Sbjct: 199 HEIIQTEYHTIKSDCD--AELAGGPARWPEIFNANIRYRTFLGMAVMMFQQLTGANYYFY 256

Query: 248 Y 250
           Y
Sbjct: 257 Y 257


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 185 SYRGEANMVIEKLHGLQCHQYYSKR*IYFAIHCRN*SRSYAHEKTSYRTSIPYTNP 352
           +++GEA   I  L+ L     YS + +YF     +    +A   + Y     +TNP
Sbjct: 322 TFQGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSKFAEFNSVYNKYFDFTNP 377


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 315 KRPTVHQYLTQTLNIRNRFLIDQIARKLEYQMKRATLRQRLG 440
           K  T++  +T+TLN+RN  LI  IA +   Q+ + T+ + LG
Sbjct: 43  KDHTINANITKTLNVRNEKLIAGIASQ---QVGKLTITKALG 81


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = -2

Query: 722  HPVTRPDCWP---APRLNFSPDCPRPASAAPEPPQWSP 618
            HPV+ P   P   AP    +P  P P  + P PP   P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 710 RPDCWPAPRLNFSPDCPRPASAAPEPPQWSP 618
           +PD W      F+ + P+ A + P P + SP
Sbjct: 201 KPDSWLTYNAQFAQNSPQLAPSIPSPMKLSP 231


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 710 RPDCWPAPRLNFSPDCPRPASAAPEPPQWSPGT 612
           R  C      NFSP C  P S   +P   SP +
Sbjct: 393 RQSCISPSGTNFSPSCYSPESLMQQPLTLSPSS 425


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 719  PVTRPDCW--PAPRLNFSPDCPRPASAAPEPPQWSPG 615
            PV +P     P P  + +P  P+P+ AAP  P  S G
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,330
Number of Sequences: 5004
Number of extensions: 58942
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)