Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N15
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.70 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 228 VFSATSITLNDRFTLLSTAGTDRAAMRMKKRPT 326
           ++  TS T++++F  L     D A +RMK  PT
Sbjct: 550 IWFTTSGTISEKFRKLIRIEDDVATLRMKLNPT 582


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 228 VFSATSITLNDRFTLLSTAGTDRAAMRMKKRPT 326
           ++  TS T++++F  L     + A +RMK  PT
Sbjct: 603 IWFTTSGTISEKFRKLIRIEDNVATLRMKLNPT 635


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 677  FSPDCPRPASAAPEPPQW 624
            FSP+   PA+ APE  Q+
Sbjct: 1803 FSPEYDDPANCAPEEDQY 1820


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 383 DRSKAGVSDEAGDITSTAWTGSSTIPS 463
           D SKAG +D +   T T    ++T+P+
Sbjct: 204 DESKAGSTDASTPATVTTTGATTTLPA 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,908
Number of Sequences: 438
Number of extensions: 4699
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)