Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N13
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   100   1e-21
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   100   1e-21
Z70680-4|CAA94569.1|  274|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  100 bits (240), Expect = 1e-21
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +2

Query: 236 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 415
           WFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K
Sbjct: 53  WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111

Query: 416 LVEKVQDG-GRILTTQGRRDLDRI 484
            VEK  DG GRIL+ QGR+DLDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +3

Query: 93  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 230
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP  P
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  100 bits (240), Expect = 1e-21
 Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
 Frame = +2

Query: 236 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 415
           WFY R A++ RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K
Sbjct: 53  WFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIK 111

Query: 416 LVEKVQDG-GRILTTQGRRDLDRI 484
            VEK  DG GRIL+ QGR+DLDRI
Sbjct: 112 WVEKHPDGKGRILSKQGRKDLDRI 135



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +3

Query: 93  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 230
           ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP  P
Sbjct: 6   SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDP 51


>Z70680-4|CAA94569.1|  274|Caenorhabditis elegans Hypothetical
           protein C25G4.6 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 84  VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 203
           +PV+ KDV +D +VK +    K T  V+ P+ +D  + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200


>AF000197-4|AAB52899.1|  274|Caenorhabditis elegans Hypothetical
           protein T21G5.4 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 84  VPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTAR 203
           +PV+ KDV +D +VK +    K T  V+ P+ +D  + A+
Sbjct: 161 IPVSDKDVARDLLVKNIQEKGKVTFVVERPDSIDAKQWAK 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,656
Number of Sequences: 27780
Number of extensions: 280625
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)