Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_N11
(946 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.31
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.31
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.41
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.7
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.9
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.31
Identities = 25/75 (33%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Frame = -1
Query: 901 GGAXXXXPXPXXXGGGGAXGG-GXGXXXXXXXXXXXXXXXXPRXXXGGPXGGXPGGXRPG 725
GG+ P P GG G GG G GG GG GG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF-GGGLGG 253
Query: 724 XGXXPXGGXGGGA*G 680
G P GG GGG G
Sbjct: 254 FGGGP-GGFGGGPGG 267
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.31
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 686 GPPPPXPXXXXAXPRXXPPGXPPP 757
GPPPP P A PP PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.95
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 674 LXXSGPPPPXPXXXXAXPRXXPPGXPPPRP 763
L PPPP P P P PPP P
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 29.1 bits (62), Expect = 0.95
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +3
Query: 684 QAPPPXPPXGXLPXPGRXPPGXPPXXXXXXXXXXXXXXXXXXXXXXXXXPXPPPXAPPPP 863
++PPP PP +P P P PP PPP PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG------PPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 686 GPPPPXPXXXXAXPRXXPPGXPPPRPP 766
G PPP P PP PPP PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP--PPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 674 LXXSGPPPPXPXXXXAXPRXXPPGXPPPRPP 766
L PPPP P P PP PPP PP
Sbjct: 4 LPPGNPPPPPPP-----PGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.72
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 681 PQAPPPXPPXGXLPXPGRXPPGXPP 755
P PPP PP P + PP PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 675 SXPQAPPPXPPXGXLPXPGRXPPGXPP 755
S P PP PP P PG PP PP
Sbjct: 3 SLPPGNPPPPP----PPPGFEPPSQPP 25
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 686 GPPPPXPXXXXAXPRXXPPGXPPP 757
G PPP P P PP PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +3
Query: 681 PQAPPPXPPXGXLPXPGRXPPGXPPXXXXXXXXXXXXXXXXXXXXXXXXXPXPPPXAPPP 860
P PPP P P P + PP P P PP PPP
Sbjct: 147 PSIPPPSPASAP-PIPSKAPP-IPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Query: 861 P 863
P
Sbjct: 205 P 205
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Frame = +2
Query: 683 SGPPPPXPXXXXAXPRXXP--PGXPPPRP 763
S P PP P P P P PPP P
Sbjct: 126 SAPAPPTPQSELRPPTSAPPRPSIPPPSP 154
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Frame = +3
Query: 624 SRXXXXRPRPXGGGXRXSXPQAPPPXPP----XGXLPXPGRXPPGXPPXXXXXXXXXXXX 791
SR +P G S P PPP PP G +P P + PP
Sbjct: 318 SRRNRGKPPIGNGSSNSSLP--PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 792 XXXXXXXXXXXXXPXPPPXAP 854
P PPP P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIP 396
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +2
Query: 689 PPPPXPXXXXAXPRXXPP---GXPPPRPP 766
PPPP P A PP PPP PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = +3
Query: 681 PQAPPPXPPXGXLPXPGRXPPGXPPXXXXXXXXXXXXXXXXXXXXXXXXXPXPPPXAPPP 860
P APP PP P P PP P PPP P
Sbjct: 425 PSAPPSLPPSAPPSLP-MGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483
Query: 861 P 863
P
Sbjct: 484 P 484
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +3
Query: 642 RPRPXGGGXRXSXPQAPPPXPPXGXLPXPGRXPPGXPP 755
+P P S P APPP PGR P PP
Sbjct: 375 QPPPLSSSRAVSNPPAPPP-------AIPGRSAPALPP 405
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -1
Query: 760 PXGGXPGGXRPGXGXXPXG-GXGGG 689
P GG PGG PG G G GGG
Sbjct: 442 PGGGFPGGGFPGGSYNSQGFGMGGG 466
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 756 GGGXPGGXXRGXAXXXXGXGGGG 688
GGG PGG G + G G GG
Sbjct: 443 GGGFPGGGFPGGSYNSQGFGMGG 465
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 765 GGRGGGXPGGXXRGXAXXXXGXGGGGPE 682
GG GG PGG G G GPE
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNGPE 639
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -1
Query: 778 RXXXGGPXGGXPGGXRPGXGXXPXGGXGGGA*GXEXRXPPPXGRG 644
R GG GG GG G G GG GG G R GRG
Sbjct: 15 RGGRGGFNGGR-GGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 765 GGRGGGXPGGXXRGXAXXXXGXGGGG 688
GGRGG G RG A G GG
Sbjct: 38 GGRGGARGGRGGRGGARGGRGGSSGG 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,189,809
Number of Sequences: 5004
Number of extensions: 12778
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -