Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_N08
(926 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 32 0.67
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 30 2.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 3.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.7
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 4.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.2
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 29 6.2
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 29 6.2
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 29 6.2
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.2
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.9 bits (69), Expect = 0.67
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP K PPPPP
Sbjct: 86 PPPPPPPPTLKAPPPPP 102
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 31.1 bits (67), Expect = 1.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP + + PPPPP
Sbjct: 480 PPPPPENEPEEFPPPPP 496
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP + PPPPP
Sbjct: 42 PPPPPCGGGYEAPPPPP 58
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 451 LXPPPPPXXKXXKXPPPPP 395
+ PPPPP PPPPP
Sbjct: 251 MPPPPPPCPMPIPCPPPPP 269
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 451 LXPPPPPXXKXXKXPPPPP 395
+ PPPPP PPPPP
Sbjct: 61 MCPPPPPPPPPPMCPPPPP 79
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 64 PPPPPPPPPMCPPPPPP 80
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXF 386
PPPPP PPPPP F
Sbjct: 761 PPPPPGGCPPPPPPPPPGGF 780
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXF 386
PPPP K PPPPP F
Sbjct: 774 PPPPGGFKGGPPPPPPPGMF 793
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 759 PPPPPPPGGCPPPPPPP 775
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 760 PPPPPPGGCPPPPPPPP 776
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 758 PPPPPPPPGGCPPPPPP 774
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 772 PPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXF 386
PPPPP PPPPP F
Sbjct: 761 PPPPPGGCPPPPPPPPPGGF 780
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXF 386
PPPP K PPPPP F
Sbjct: 774 PPPPGGFKGGPPPPPPPGMF 793
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 759 PPPPPPPGGCPPPPPPP 775
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 760 PPPPPPGGCPPPPPPPP 776
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 758 PPPPPPPPGGCPPPPPP 774
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 772 PPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXF 386
PPPPP PPPPP F
Sbjct: 344 PPPPPGGCPPPPPPPPPGGF 363
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXF 386
PPPP K PPPPP F
Sbjct: 357 PPPPGGFKGGPPPPPPPGMF 376
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 342 PPPPPPPGGCPPPPPPP 358
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 343 PPPPPPGGCPPPPPPPP 359
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 341 PPPPPPPPGGCPPPPPP 357
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 355 PPPPPPGGFKGGPPPPP 371
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPPKXFLXXFXG 368
PPPPP PPPPP L G
Sbjct: 539 PPPPPVGMANGGPPPPPPLPLDLLKG 564
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 1344 PPPPPSDDLTPVPPPPP 1360
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 481 PRXXPLFFXXLXPPPPPXXKXXKXPPPPP 395
P P PPPPP PPPPP
Sbjct: 565 PPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 578 PPPPPPPMLGGPPPPPP 594
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 579 PPPPPPMLGGPPPPPPP 595
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 580 PPPPPMLGGPPPPPPPP 596
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 287 PPPPPSSGMWPPPPPPP 303
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -2
Query: 514 GXPXXKKXXXXPRXXPLFFXXLXPPPPPXXKXXKXPPPPP 395
G P R P + PPPPP + PPPP
Sbjct: 312 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 297 PPPPPSSGMWPPPPPPP 313
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -2
Query: 514 GXPXXKKXXXXPRXXPLFFXXLXPPPPPXXKXXKXPPPPP 395
G P R P + PPPPP + PPPP
Sbjct: 322 GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 445 PPPPPXXKXXKXPPPPP 395
PPPPP PPPPP
Sbjct: 41 PPPPPMCGCAPPPPPPP 57
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -1
Query: 479 PXXPPFFXPXXPPPXPLXXXXKXSPPXP*T 390
P PP F PPP P PP P T
Sbjct: 105 PPPPPMFGAPPPPPPPSGLGVAPQPPRPKT 134
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 451 LXPPPPPXXKXXKXPPPPP 395
+ P PPP K PPPPP
Sbjct: 294 MSPIPPPPIKEESPPPPPP 312
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 451 LXPPPPPXXKXXKXPPPPP 395
+ P PPP K PPPPP
Sbjct: 294 MSPIPPPPIKEESPPPPPP 312
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 451 LXPPPPPXXKXXKXPPPPPKXF 386
L PPPPP + PPPP +
Sbjct: 93 LGPPPPPPHYYTQPPPPPQSGY 114
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 252 PPPXGXPXPPLXPRXXGXPG 193
PPP G P PP P G PG
Sbjct: 210 PPPPGPPGPPGPPGNDGQPG 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,417
Number of Sequences: 27780
Number of extensions: 171241
Number of successful extensions: 2421
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -