Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N07
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    67   3e-12
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    34   0.023
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    31   0.16 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.86 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    27   2.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.5  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   4.6  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.1  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   8.0  

>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
 Frame = +1

Query: 283 PVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKKHNVKITE 462
           P    DLA+H  K+  ++ W+L +  +  S +LL+ GP GCGKS  V  +AK+    + E
Sbjct: 78  PQKAADLAVHKSKISAIKQWMLTDSLE--SRLLLICGPSGCGKSTAVQVLAKELGYSLIE 135

Query: 463 WITPIDIEFP-NDNANFTSLLDNNDRKLVLVEDFP 564
           W+ P++++ P N  ++  SL +   R + L E +P
Sbjct: 136 WLNPMNLKEPSNQESDTLSLTEKFSRFMSLCETYP 170


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 268 IRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKK 441
           +  + P N+ D+  H   +  +E +I      N    +L  GP G GK+ T+L  A+K
Sbjct: 26  VEKYRPANLEDVVSHKDIISTLEKFI----SSNRVPHMLFYGPPGTGKTSTILACARK 79


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 301 LAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLT 429
           LAIH  K Q+  DW+L   +   S +++ T     G  V  +T
Sbjct: 397 LAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGIT 439


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 364 NTSEMLLLTGPVGCGKSVTVLTIAKKHNVK 453
           N S++L+++G  GCGKS  +     +++ K
Sbjct: 645 NNSQLLIISGDTGCGKSTQIPAFLLENSTK 674


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 367 TSEMLLLTGPVGCGKSVTVLTIAKKHNVKIT 459
           T+E LLL G  G GK+ T+  +A     K+T
Sbjct: 466 TNEPLLLVGETGTGKTTTIQLLAGLLGQKVT 496


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 379 LLLTGPVGCGKSVTVLTIAKK 441
           LLL GP GCGK++    +AK+
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ 148


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 310 HNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKKHNVKITE 462
           H  +  ++  W+   I       +++ GP G GKSV V  I  +   +I E
Sbjct: 555 HMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 643 FICSESSTDKKTTSGNLFSDQLK----NQLNIHHISFNGVSTTG 762
           F+  E+++D  T+S +  + ++     N+L++ H+SFN  S  G
Sbjct: 132 FVSDETASDSATSSSSDTNKKVNRKEHNELSLSHLSFNDTSDFG 175


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 337 DWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKKHNVKITE 462
           D + G+I KN S  ++L G  G GK+     IAK+ N K  +
Sbjct: 854 DPLKGSISKNAS--IILIGMRGAGKTTIGKIIAKQLNFKFLD 893


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +1

Query: 646 ICSESSTDKKTTSGNLFSDQLKNQ---LNIHHISFNGVSTTGLRSA 774
           ICS SSTD+K TS    S++L+ +   ++I+ +  N +S   +RS+
Sbjct: 45  ICSLSSTDRKKTS---ISNKLQQEFCIMDINKVGRNFISLGKIRSS 87


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 379 LLLTGPVGCGKSVTVLTIAKKHNV 450
           +LLTGP G GK++    +A + NV
Sbjct: 303 VLLTGPPGTGKTMLARAVAGEANV 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,893
Number of Sequences: 5004
Number of extensions: 62095
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)