Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_N07
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 53 3e-07
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855... 42 5e-04
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 36 0.056
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 34 0.17
12_02_0993 + 25091074-25091169,25091681-25092047,25092132-25092316 33 0.22
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 32 0.69
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 29 3.7
09_06_0373 + 22632638-22633195,22633279-22633485,22633583-226337... 29 4.8
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 29 4.8
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 28 8.5
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 53.2 bits (122), Expect = 3e-07
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Frame = +1
Query: 268 IRNFDPVNINDLAIHNKKVQEVEDWILGNIK--KNT--SEMLLLTGPVGCGKSVTVLTIA 435
+ + P ++ +L++H KKV++V+ W+ ++ K T L+LTG G GKS T+ IA
Sbjct: 66 VDKYKPHSLAELSVHKKKVEDVKKWLDEKLRAPKGTFGGWTLVLTGQAGVGKSATIKAIA 125
Query: 436 KKHNVKITEWITPI 477
+ V+I EW P+
Sbjct: 126 AELGVEICEWTAPV 139
>03_02_0445 -
8551912-8552047,8552729-8552896,8553785-8554068,
8554143-8555386,8556901-8556967,8557059-8557150,
8557269-8557480,8558541-8558623,8559092-8559122,
8559770-8559951,8560557-8560616,8561092-8561289,
8561485-8561539,8562740-8562855,8563012-8563176,
8563310-8563483,8564134-8564333,8564778-8564882,
8565063-8565126,8566452-8566718
Length = 1300
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +1
Query: 256 DQNHIRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIA 435
D+ RN + N +++ + Q+ D + +LL+TGPVGCGKS V A
Sbjct: 401 DERGHRNKQNIVTNG-SMNGRSCQDGSDTDYSEDASDYENVLLITGPVGCGKSAAVFACA 459
Query: 436 KKHNVKITEWITPIDIEFP 492
++ + E P + FP
Sbjct: 460 REQGFNVIELNMPKTVVFP 478
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 35.5 bits (78), Expect = 0.056
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 268 IRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKK 441
+ + P ++ D+A H +++ D I +N LLL GP G GK+ T+L +A+K
Sbjct: 41 VEKYRPQSLGDVAAH----RDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARK 94
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 310 HNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKKHNVKITE 462
H KVQ +E+ + G IK S + LL GP GCGK+ + +A + N + E
Sbjct: 14 HQSKVQILEN-VSGIIKP--SRITLLLGPPGCGKTTLLKALAGRLNKSLKE 61
>12_02_0993 + 25091074-25091169,25091681-25092047,25092132-25092316
Length = 215
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 481 IEFPNDNANFTSLLDNNDRKLVLVEDFPNTFMRTPSELVYVLQQ 612
+EF N + LDN D LV++E+ PN P EL + +++
Sbjct: 110 VEFANCADAMVNFLDNYDANLVVIENLPNGVFADPFELQHFVER 153
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 370 SEMLLLTGPVGCGKSVTVLTIAKK--HNVKIT 459
S + LL GP GCGK+ +L +A K N+K+T
Sbjct: 185 SRLTLLLGPPGCGKTTLLLALAGKLDKNLKVT 216
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +1
Query: 220 SNTIKPMIFNIIDQNHIRNFDPVNINDLAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPV 399
S++ P + + D + + P + D+ ++ V ++D N L+L+GP
Sbjct: 4 SSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPN----LILSGPP 59
Query: 400 GCGKSVTVLTIA 435
G GK+ ++L++A
Sbjct: 60 GTGKTTSILSLA 71
>09_06_0373 +
22632638-22633195,22633279-22633485,22633583-22633798,
22635375-22635441,22635531-22635677,22635811-22635906,
22636530-22636642,22636732-22636868,22637096-22637336
Length = 593
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +1
Query: 508 FTSLLDNNDRKLVLVEDFPNTFMRTPSELVYVLQQYKQ 621
F SLLD DR+ V D P R P E V + Y Q
Sbjct: 33 FWSLLDKADRRFARVRDLPLFGRREPDEYGKVFRIYTQ 70
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +1
Query: 343 ILGNIKKNTSEMLLLTGPVGCGKSVTVLTIAKKHNVKITEWITPIDIE 486
I + K +L+T V CG ++ L +HN + +W + + +E
Sbjct: 209 IYSAVNKGVELSMLMTNSVACGLNIYHLLSIYRHNKERKKWYSTLSLE 256
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 301 LAIHNKKVQEVEDWILGNIKKNTSEMLLLTGPVGCGKSV 417
L+IH K Q DW+L K S ++ T G V
Sbjct: 338 LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDV 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,944,749
Number of Sequences: 37544
Number of extensions: 335987
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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