Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N07
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    26   0.39 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   8.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 415 VTVLTIAKKHNVK-ITEWITPIDIEFPNDNANFTSLLDNNDRKLVLVEDFPNTFMRTPSE 591
           +  L +A    +K I  W   I+  FPNDN   T L+ N D   +   + PN       +
Sbjct: 7   IVFLALANGEEIKTIYSW-NVIEYNFPNDNIRNT-LISNGD--YIEENNMPNGMQIWNDK 62

Query: 592 LVYVLQQYKQRAKSPIVFICSESSTD 669
           +   + ++K    S + F      ++
Sbjct: 63  VFITIPRWKNGVPSNLNFFLKNDESE 88


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 205 AKFSKSNTIKPMIFNIIDQNHIRNFDPVNINDL 303
           + F K    +P +F+ +     RN D  N NDL
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNIDEYNNNDL 379


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 345 YPIFNFLNLFIVYGQVIDIDRI 280
           Y I NF ++  VYG + D DR+
Sbjct: 84  YDISNFTDVDPVYGTLADFDRL 105


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +1

Query: 469 TPIDIEFPNDNANFTSLLDNNDRKLVLVEDFPNTFMRTPSELVYVLQQYKQRAKSPIVFI 648
           +PI+ E      + ++  D  + K     D   T+  TP +  Y +   +Q ++S ++  
Sbjct: 294 SPIEPEIEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLI-- 351

Query: 649 CSESSTDKKTT 681
            S  + D +TT
Sbjct: 352 -SNENRDFQTT 361


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 327 LNLFIVYGQVIDIDRIK 277
           L + +VYG++ DID  +
Sbjct: 17  LQIALVYGEISDIDEFR 33


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 550 VEDFPNTFMRTPSELVYVLQQYKQRAKSPIVFICSESSTDKKTT 681
           V D+P     +P     V  QYK   +     I   S TD + T
Sbjct: 395 VSDYPLELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENT 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,429
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)