Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N03
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
 Frame = +3

Query: 651 PGXPXXXPPPXYXXYXXSPPXKXRSXRAP---AXXPXXGPPPGXAXXPFPXPWPXP 809
           P  P   PP        +PP    +  AP   A  P   P P  A  P P P P P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 20/75 (26%), Positives = 22/75 (29%)
 Frame = +3

Query: 705 PPXKXRSXRAPAXXPXXGPPPGXAXXPFPXPWPXPXPXXXXGPFXLGGXGXPSPGXXXRV 884
           PP +  S  APA  P   P  G    P P   P P       P        P P    RV
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSP-PNSPPRPIAPVSMNPAINSTSKPPLPPPSSRV 299

Query: 885 PSGXXPPXXVXPXXP 929
            +         P  P
Sbjct: 300 SAAALAANKKRPPPP 314


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +3

Query: 759 PPPGXAXXPFPXPWPXPXPXXXXGPFXLGGXGXPSPGXXXRVPSGXXPPXXVXP 920
           PPP       P P P P P     P  +GG   P P       +G  PP    P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPI-MGGPPPPPPPPGV-AGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 31/128 (24%), Positives = 35/128 (27%), Gaps = 2/128 (1%)
 Frame = +3

Query: 537  PLWAGRPAPRXLGGKXPXXPXVSPWXSXPXXLIRGXXAPGXPXXXPPPXYXXYXXSPPXK 716
            P  A  P P   G      P V+   + P  +  G      P    PP        P  K
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVA---APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK 1163

Query: 717  XRSXRAPAXXPXXG--PPPGXAXXPFPXPWPXPXPXXXXGPFXLGGXGXPSPGXXXRVPS 890
                  P   P  G  P P  A    P P P   P        +     PS       PS
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223

Query: 891  GXXPPXXV 914
               PP  V
Sbjct: 1224 AGLPPVPV 1231



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 23/85 (27%), Positives = 24/85 (28%)
 Frame = +3

Query: 675  PPXYXXYXXSPPXKXRSXRAPAXXPXXGPPPGXAXXPFPXPWPXPXPXXXXGPFXLGGXG 854
            PP       +PP    S   P   P    PP  A  P     P P P     P       
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVPPVPPPSEA 1197

Query: 855  XPSPGXXXRVPSGXXPPXXVXPXXP 929
             P P     VP    PP    P  P
Sbjct: 1198 PPVPKPSVGVP--PVPPPSTAPPVP 1220


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = +3

Query: 702  SPPXKXRSXRAPAXXPXXGPPPGXAXXPFPXPWPXPXPXXXXGPFXLGGXGXPS 863
            +PP + +S   P       PPP  +  P P   P P       P  L     PS
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,322
Number of Sequences: 5004
Number of extensions: 19298
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)