Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_N03
         (968 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            28   0.48 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    28   0.48 
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   7.9  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 24/88 (27%), Positives = 27/88 (30%)
 Frame = +1

Query: 553 GPRPAXWGXXGRXXRXFPXGAPXPXPSSGXXXLXVFPXXPPPPXXXXTXXXPXXRXGRXA 732
           GP P   G  GR     P G P P P  G   L + P   PPP              +  
Sbjct: 511 GP-PHGAGYDGRDLTGGPLGPPPPPPPGGAV-LNIPPQFLPPPLNLLRAPFFPLNPAQLR 568

Query: 733 XPLXXLPRGPXRVRPXXPSXXXGLXPXP 816
            P    P  P    P  P     + P P
Sbjct: 569 FP-AGFPNLPNAQPPPAPPPPPPMGPPP 595



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 26/94 (27%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
 Frame = +3

Query: 660 PXXXPPPXYXXYXXSPPXKXRSXRAPAXXP-XXGPPPGXAXXPFPXPWPXPXPXXXXGPF 836
           P   PPP         P      R PA  P      P  A  P P   P P P    GP 
Sbjct: 545 PQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPPPPMGPPPSP-LAGGP- 602

Query: 837 XLGGXGXPSPGXXXRVP-SGXXPPXXVXPXXPXV 935
            LGG     P     +   G  PP  +    P +
Sbjct: 603 -LGGPAGSRPPLPNLLGFGGAAPPVTILVPYPII 635



 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
 Frame = +3

Query: 747 PXXGPPPGXAXXPFPXPWPXPXPXXXXGP-FXLGGXGXPSPGXXXRVPSGXXPPXXVXP 920
           P   PPPG A    P  +  P       P F L       P     +P+   PP    P
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPP 588


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 814 GKGXGXGXGKGXXAXPGGGPXXGSXAGAR 728
           G+G G G G+G     GGG   G   G R
Sbjct: 74  GRGGGRGRGRGRGGRDGGGGFGGGGYGDR 102


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
 Frame = -2

Query: 928 GXXGXTXXGGHXPEGTRXXXPGEGXPXPPRXKGPXXXXGKGXGXGXGKGXXAXPGGGPXX 749
           G  G     G   E  +     +G P PP   GP    G   G     G    PG     
Sbjct: 693 GLNGAPGEKGQKGETPQLPPQRKGPPGPPGFNGPKGDKGL-PGLAGPAGIPGAPGAPGEM 751

Query: 748 G--SXAGARXDRXLXG 707
           G     GAR  + L G
Sbjct: 752 GLRGFEGARGLQGLRG 767


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,486
Number of Sequences: 2352
Number of extensions: 7686
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 105652443
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)