Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M23
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    29   3.4  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   4.5  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   5.9  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   5.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.8  

>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 547 PPPXGGGXXXXXPPXPPXXXG 485
           PPP GGG     PP PP   G
Sbjct: 44  PPPCGGGYEAPPPPPPPSYAG 64



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 545 PPXGGXVXXXXPPXPPPXXGGXXFXXP 465
           PP GG      PP PP   GG  +  P
Sbjct: 45  PPCGGGYEAPPPPPPPSYAGGPSYAGP 71


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 537 GGXGXXFXXPPPPPXGGG 484
           GG G     PPPPP GGG
Sbjct: 23  GGGGGCCAPPPPPPCGGG 40


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 485 PPPXGGGGGXXXXXPXPPXGG 547
           PPP G G G     P PP GG
Sbjct: 757 PPPFGRGAGPMSSFPPPPRGG 777


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 546 PPXGGXGXXFXXPPPPP 496
           PP GG G     PPPPP
Sbjct: 664 PPPGGLGGFMPPPPPPP 680


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 546 PPXGGXGXXFXXPPPPP 496
           PP GG G     PPPPP
Sbjct: 664 PPPGGLGGFMPPPPPPP 680


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 546 PPXGGXGXXFXXPPPPPXGGG 484
           PP GG       PPPPP  GG
Sbjct: 730 PPPGGLPPITGGPPPPPPPGG 750


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 546 PPXGGXGXXFXXPPPPPXGGG 484
           PP GG       PPPPP  GG
Sbjct: 730 PPPGGLPPITGGPPPPPPPGG 750


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 546 PPXGGXGXXFXXPPPPPXGGG 484
           PP GG       PPPPP  GG
Sbjct: 313 PPPGGLPPITGGPPPPPPPGG 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,342,206
Number of Sequences: 27780
Number of extensions: 114043
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)