Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_M21
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.88
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 28 1.5
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 2.0
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 2.7
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 3.5
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0... 27 3.5
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 3.5
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 4.7
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 6.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 6.2
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 26 6.2
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 8.2
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 8.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 8.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 8.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 8.2
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.1 bits (62), Expect = 0.88
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 345 CTCISNFVKIRESKCDQYSFKPLRSETLMK 256
C ++ + S+C +Y FKPL +E ++K
Sbjct: 160 CNYMTRIIDPLSSRCSKYRFKPLDNENMVK 189
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 258 KCIICSIILSTLKPLSLSAFKSLSNAFRVLAKPLNNKYSLT---NSSTNC 118
KC++C+IIL PL + +++ NA + +NK LT N T C
Sbjct: 109 KCLVCNIILDIQDPLLSLSLEAMKNATKA-----SNKSQLTAWENELTTC 153
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 392 VTAAQNTSLIRNEKITDFFNKMLPELQGQNEWKEWFTFPYIQKPE--ENPSF 541
V+ ++T ++ +F LP+++ EW +WF F + + E +NP F
Sbjct: 27 VSKKEDTEPEVRDEAKEFLLSQLPQVEVP-EWAQWFDFSKVHEIEKKQNPEF 77
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 717 SIGCCCSVAANLSCSFFTSIASLS*LVSVGCGIHWNTV 604
++G C ++ A+L +F TS+ ++ + CG W +
Sbjct: 479 ALGKCGAILASLLFNFLTSVIGYGNVMWIFCGCMWGAI 516
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 680 DKLAATLQQQPMDKTSPTTHQSRLSQ 757
DKL+A+LQQ + S T QSR++Q
Sbjct: 51 DKLSASLQQVNISSPSVPTSQSRVTQ 76
>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
Q0080|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 48
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1
Query: 464 LATFY*RNLLSFHFLLNWYSVQLSLSTVYI 375
L FY N+LSF FL+ ++V L +S+VY+
Sbjct: 4 LVPFYFINILSFGFLI--FTVLLYISSVYV 31
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 3.5
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 53 RTLVSKTAAY*ISGLGQNMAHVQFVDELVREYLLFRGFASTLKAFDNDLKADKDKGFRVD 232
R + K+ Y I G+ + +V RE LL GF ++AFD+ + + GFR +
Sbjct: 828 RQKLKKSFQYEIKWFGKPHKYNTWVS---REILLENGFQKFVQAFDDMESSREGLGFR-E 883
Query: 233 KIIEQI-MHFINVSDLNGLKEYWSHLDSL 316
I E I HF +V + +Y S + SL
Sbjct: 884 LIPEDIRAHFEDVGLPGDIADY-SPISSL 911
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 717 SIGCCCSVAANLSCSFFTSIASLS*LVSVGCGIHWNTV 604
++G C ++ A+L +F TSI ++ + CG W +
Sbjct: 491 ALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCMWGGI 528
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 572 SVLVSLHNLLATVFQCMPQPTLTSYESDAILVKKLQDKLAATLQQQPMD 718
S L +LH + + + TL+S + IL+KKL + + A Q +D
Sbjct: 305 SSLYTLHQVYTATSESINIKTLSSTTPEYILLKKLSETIVALGQYNYLD 353
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 17 DSL*GILKIFGDRTLVSKTAAY*ISGLGQNMAHVQFVDELVREYLLFR 160
+ L G+++++ +R + + +GLG AH+ F EL Y ++
Sbjct: 1277 EELPGLIRLYEERGYFEEVISLMEAGLGLERAHMAFYTELAILYAKYK 1324
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.2
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 254 HFINVSDLNGLKEYWSHLDSLIFTKLEIHV-QPAIRKLEYSLYKLYLVTAAQNTSLIRN- 427
H IN++D ++ + S + +E+ + Q A R +E L A ++ N
Sbjct: 218 HSINLNDAETMQRHLDMRFSQLNVAVELELWQEAFRSIEDIHSLLTFSKRAPAAVMLGNY 277
Query: 428 -EKITDFFNKMLPELQGQNEWKEWFTFPYIQKP 523
K+ F L W +FTF +QKP
Sbjct: 278 YRKLIKIFLVCDNYLLHAAAWNRYFTFTNVQKP 310
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 119 QFVDELVREYLLFRGFASTLKAF 187
+F++EL+ +LL GF T K F
Sbjct: 266 EFLNELISSFLLNNGFVETAKKF 288
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 563 WQDSVLVSLHNLLATVFQCMPQPTLTSYESDAILV 667
W+D + V ++LL T+FQ P P + + AI +
Sbjct: 41 WKDRMSVKTNSLLQTLFQ-TPLPNANIWSNQAIRI 74
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +2
Query: 548 YFTRAWQDSVLVSLHNLLATVFQCMPQPTL---TSYESDAILVKKLQD-KLAATLQ 703
YF D L+ + NLL T+ + + P L T Y+ I++ D LA+TLQ
Sbjct: 857 YFVTNNPDKSLLEIQNLLNTLQRYLTNPALKNVTLYQDWDIVIDDSADVSLASTLQ 912
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 555 VKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFCAAVTKYS-- 382
VK + E F++GF + G ++HS + N +L S +F ++K + V ++
Sbjct: 517 VKIEYTEDFATGFAISGEISHSIN-----NLEFVLYSLSSLFLMMLKWFRLSHVLRFERL 571
Query: 381 LYKLYSN 361
+ LY N
Sbjct: 572 AFLLYEN 578
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 270 ETLMKCIICSIILSTLKPLSLSAFKSLSNAFRVLAKPLNNKYSLTNSSTNCTCAIF 103
ET+++CI+ ++I+S LS L L + +N + SL + + C ++
Sbjct: 29 ETMLQCILEAVIVSKDAKQVLSLLHELKLFENFLWQRVNTEMSLNHINLTCMLLLY 84
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +2
Query: 263 NVSDLNGLKEYWSHLDSLIFTKLEIHVQPAIRKLEYSLYKLYLVT---AAQNTSLIRNEK 433
N S + +K S++ S I H Q + + ++ K +L+ + + L N+
Sbjct: 250 NTSSIFQVKNEMSNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPFEFSLEGGFLNYNKT 309
Query: 434 ITDFFNKMLPELQGQNEWKEWFTFPYIQK 520
++ + K+L E + + K WFTF + K
Sbjct: 310 FSNLY-KVLSETEKTRDSKVWFTFRLVLK 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,987
Number of Sequences: 5004
Number of extensions: 69412
Number of successful extensions: 239
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -