Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M20
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0479 + 14529783-14530613                                         34   0.18 
04_03_0960 - 21257219-21257953                                         29   4.0  
07_03_1629 - 28246440-28247339                                         29   5.2  
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112...    29   6.9  
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113...    29   6.9  
02_04_0025 - 19006493-19007040,19007665-19007899                       28   9.2  

>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -3

Query: 262 RPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 152
           R   MA  RR   +RRR WGR     R P   +R WL
Sbjct: 83  RRAGMAASRRFRGVRRRPWGRFSAEIRDPSLQKRLWL 119


>04_03_0960 - 21257219-21257953
          Length = 244

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 262 RPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 152
           R G++   R+   +RRR WG+     R P    R WL
Sbjct: 53  RQGAVPAARKYRGVRRRPWGKWAAEIRDPHRAARVWL 89


>07_03_1629 - 28246440-28247339
          Length = 299

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 241 PRRACHLRRRSWGRMCKRHRTPPCLRRTWL 152
           P R   +RRR WGR     R P    R WL
Sbjct: 36  PGRFLGVRRRPWGRYAAEIRDPTTKERHWL 65


>10_08_0206 +
           15809261-15809390,15810655-15810763,15811237-15811265,
           15811721-15813048
          Length = 531

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 256 GSMACPRRACHLRRRSWGRMCKRH 185
           G   C R   H+R   W R CK+H
Sbjct: 140 GPYHCRREGLHVRSNQWKRDCKKH 163


>05_03_0425 -
           13808840-13809414,13809552-13809765,13810268-13811317,
           13811616-13811687,13812075-13812334,13812647-13812731
          Length = 751

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = -3

Query: 205 GRMCKRHRTPPCLRRTWLCKN-----SQGVGMAFPSWECAR-XSGL 86
           G +CK+    P  + T LCKN     +Q +  A PS+ C +  SGL
Sbjct: 477 GALCKQGLLGPAAQETGLCKNLLQEYAQKMNYAIPSYICTKPASGL 522


>02_04_0025 - 19006493-19007040,19007665-19007899
          Length = 260

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 256 GSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 152
           G+ A  R    +RRR WG+     R P    R WL
Sbjct: 79  GAAAAERHYRGVRRRPWGKWAAEIRDPNKAARVWL 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,731,790
Number of Sequences: 37544
Number of extensions: 124299
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)