Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M16
         (888 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9V460 Cluster: Transcription elongation factor SPT5; n...    63   1e-08
UniRef50_A0NE83 Cluster: ENSANGP00000031674; n=3; Diptera|Rep: E...    61   4e-08
UniRef50_UPI00015B6054 Cluster: PREDICTED: similar to GA20489-PA...    51   3e-05
UniRef50_Q89T23 Cluster: Blr2227 protein; n=2; Rhizobiales|Rep: ...    33   9.7  

>UniRef50_Q9V460 Cluster: Transcription elongation factor SPT5; n=5;
           Eumetazoa|Rep: Transcription elongation factor SPT5 -
           Drosophila melanogaster (Fruit fly)
          Length = 1078

 Score = 62.9 bits (146), Expect = 1e-08
 Identities = 30/63 (47%), Positives = 37/63 (58%)
 Frame = +3

Query: 555 GGFIIXXXXXXXXXXXXXXXXXXXXXMGIVGNEVDEIGPTAREIEGRRRGTNLWDHRKRX 734
           GGFII                     +GIVGNE+DE+GPTAR+IE RRRGTNLWD +K  
Sbjct: 112 GGFIIDEAEVDDEVDEDDEWEEGANEIGIVGNEIDELGPTARDIEIRRRGTNLWDTQKED 171

Query: 735 RLK 743
            ++
Sbjct: 172 EIE 174



 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +2

Query: 719 SQKEXEIEEYLRNKYADDSAALRHLGEVXKKCLMNYS-ATLLPGI 850
           +QKE EIEEYLR KYAD+S A RH G+  ++     +  TLLPGI
Sbjct: 167 TQKEDEIEEYLRKKYADESIAKRHFGDGGEEMSDEITQQTLLPGI 211


>UniRef50_A0NE83 Cluster: ENSANGP00000031674; n=3; Diptera|Rep:
           ENSANGP00000031674 - Anopheles gambiae str. PEST
          Length = 980

 Score = 60.9 bits (141), Expect = 4e-08
 Identities = 30/62 (48%), Positives = 33/62 (53%)
 Frame = +3

Query: 555 GGFIIXXXXXXXXXXXXXXXXXXXXXMGIVGNEVDEIGPTAREIEGRRRGTNLWDHRKRX 734
           GGFII                     MGIV NE++E+G TAREIE RRRGTNLWD  K  
Sbjct: 120 GGFIIDEAEVDDEVDEDDEWEDGAQEMGIVSNEIEEVGQTAREIENRRRGTNLWDSHKED 179

Query: 735 RL 740
            L
Sbjct: 180 EL 181



 Score = 38.7 bits (86), Expect = 0.20
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 719 SQKEXEIEEYLRNKYADDSAALRHLGEVXKKCLMNYS-ATLLPGI 850
           S KE E+ EYL+ KYAD S A R  G+  ++     +  TLLPGI
Sbjct: 175 SHKEDELAEYLKRKYADASVARRQFGDGGEEMSDEITQQTLLPGI 219


>UniRef50_UPI00015B6054 Cluster: PREDICTED: similar to GA20489-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA20489-PA - Nasonia vitripennis
          Length = 1106

 Score = 51.2 bits (117), Expect = 3e-05
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = +3

Query: 633 MGIVGNEVDEIGPTAREIEGRRRGTNLWDHRKRXRLK 743
           +GIV NE+DE+GPTAREIEGRRR ++++D  K   ++
Sbjct: 166 LGIVENEIDEVGPTAREIEGRRRISDIFDSHKEEEIE 202



 Score = 39.9 bits (89), Expect = 0.085
 Identities = 21/44 (47%), Positives = 24/44 (54%)
 Frame = +2

Query: 719 SQKEXEIEEYLRNKYADDSAALRHLGEVXKKCLMNYSATLLPGI 850
           S KE EIEEYLRNKYA+++    H G            TLLP I
Sbjct: 195 SHKEEEIEEYLRNKYANEARVAHHFGNGEHMNDEITQQTLLPNI 238


>UniRef50_Q89T23 Cluster: Blr2227 protein; n=2; Rhizobiales|Rep:
           Blr2227 protein - Bradyrhizobium japonicum
          Length = 428

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 199 RGVGPRQAVLYQNNHIAALHRIGRQDRVLSLDQGPGR 309
           R + P + VLY++ HI   +RI + +R+L   +GP R
Sbjct: 272 RSIMPTRPVLYESGHITVYYRIDQHNRLLMGGRGPMR 308


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,301,466
Number of Sequences: 1657284
Number of extensions: 11128973
Number of successful extensions: 25401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25392
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)