Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M16
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   2.0  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    26   8.2  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 190  LPSESDITT*NECIRTI*VIFTNLTYVN 107
            LP+ESDI+  NE  RT+  + T+LT  N
Sbjct: 1695 LPAESDISKTNETTRTLQSLTTSLTNSN 1722


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 764 HTYFEDILQSPPLSVIPK 711
           H  ++++L SPP+S +PK
Sbjct: 182 HVSWKEVLHSPPISCLPK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,883
Number of Sequences: 5004
Number of extensions: 47650
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)