Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M16
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0109 - 11919279-11920109                                         29   4.9  
11_08_0014 - 27631971-27632374,27632486-27635402                       28   8.6  

>06_02_0109 - 11919279-11920109
          Length = 276

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 845 RVVELLSNSSDIFXPPHPSV*GLLSHLHTYFEDILQSP 732
           ++++LL +      PP P++ G+LS L    +DI +SP
Sbjct: 40  KILKLLEDKKTPSTPPDPAMAGVLSGLRGALDDISRSP 77


>11_08_0014 - 27631971-27632374,27632486-27635402
          Length = 1106

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 221 ACLGPTPRIVTTFRIRHYYLKRMHSNHLGNIY*FNVCKLISLKRT 87
           +C    PR+V   R+R   L+   + HLGN+   +V +L  L  T
Sbjct: 79  SCSRRRPRVVVGLRLRDVPLEGELTPHLGNLSFLHVLRLTGLNLT 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,860
Number of Sequences: 37544
Number of extensions: 306003
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)