Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M10
         (890 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.45 
UniRef50_A0C8J7 Cluster: Chromosome undetermined scaffold_158, w...    33   7.4  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.45
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +2

Query: 674 DPDMIRYIDEXGQTXXRMQ 730
           DPDMIRYIDE GQT  RMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0C8J7 Cluster: Chromosome undetermined scaffold_158,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_158,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 134

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +3

Query: 411 VIFFFKLDILKLNTCVSQIGYVIFYMSFLL*IIRIAYLPKLLCISCRYRN 560
           V FFFKL ++K N  + ++G + F +  L  ++ +AY+  L  ++ +Y N
Sbjct: 65  VFFFFKLKLIK-NVDLEEVGMLPFLLEILCCLMNLAYVSYLHYVTVQYCN 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,864,579
Number of Sequences: 1657284
Number of extensions: 8104586
Number of successful extensions: 13293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13289
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)