Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M05
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    50   6e-05
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    47   6e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.48 
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    37   0.85 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    35   2.6  

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 27/41 (65%), Positives = 27/41 (65%)
 Frame = +1

Query: 463 SXSXXTDSLXXXVRLRXXVSAHXKAXIRLSTXSGDTXGKXM 585
           S S  TDSL   VRLR  VSAH KA IRLST SGD  GK M
Sbjct: 19  SASSLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 23/43 (53%), Positives = 24/43 (55%)
 Frame = -2

Query: 607 PFXGLLVTXFFLXYPLIXWITVXPPLXELIPXXXAXRPXAASQ 479
           P    L+T  F  YPLI WITV PPL EL P     RP  ASQ
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 431 RXKAVXXXGXLPXPRXLTRCXRXXGCGXRYQLT 529
           R   +   G +P PR LTR  R  GCG RY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 36.7 bits (81), Expect = 0.85
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 407 CXNESXNXRXKAVXXXGXLPXPRXLTRCXRXXGCGXRYQL-TQRRXYGYPXNQGIPQ 574
           C  +    R +AV     LP  R  TRC R  GCG      +  R YG P  QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +3

Query: 408 AXMNRPTXGXRRXAXXAXFRFXAH 479
           A MNRPT G RR A  A FRF AH
Sbjct: 26  ALMNRPTRGERRFAYWALFRFLAH 49


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,363,173
Number of Sequences: 1657284
Number of extensions: 5103166
Number of successful extensions: 8469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8416
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)