Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M05
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    29   7.0  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           28   9.3  

>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
 Frame = +1

Query: 649 RPPPPXTSITKXXAQVXGGRXPDXTYNDX--TRXPPGNXPPXRSSLFPTXXXXPGXPXXA 822
           RPPPP        A          ++++   +R PP   PP  +   P+    P  P   
Sbjct: 6   RPPPPFAPQNPTPAPNPAASSLPASFSNLHVSRAPPPFAPPGGNGPVPSSIRAPQAPPPG 65

Query: 823 XLPFRXXRXPPLXXXQP 873
             PF     PP     P
Sbjct: 66  ARPFPGSPPPPSQPPPP 82


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 644 PIGPRPPXRASQXSXPKSXXAXXPTGPITXP 736
           P+ P PP  A   + P +     PT P+T P
Sbjct: 441 PLVPTPPAHAPPVATPPTLATPVPTPPVTAP 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,840
Number of Sequences: 37544
Number of extensions: 178437
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)