Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M04
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.29 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    29   0.67 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   6.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.2  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 138 DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 260
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 40/120 (33%), Positives = 52/120 (43%)
 Frame = +3

Query: 15  RSHYREFLKILTCPKLSADPHFNFEHQTQCALPRDEQ*INFDKQY*VVMEKEHQPDSMAT 194
           RSH R + KI+     S    F+FE   +CA       IN D+    V EK   PDS   
Sbjct: 406 RSHVRSYKKIIIFLSCSDSVDFHFE-AFRCA-------INADEMEEAVKEK---PDSEGD 454

Query: 195 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAAR 374
           I      P   +   S     YR   S S QI + + L + +SS   G+ IL  + VAAR
Sbjct: 455 IISNA--PALRIDGKSN---VYRLHGSLSQQI-RTSTLNLFSSSEDSGSHILLCTDVAAR 508


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 177 PDSMATITMKPEYPPSEVYSTSEPPP 254
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 177 PDSMATITMKPEYPPSEVYSTSEPPP 254
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 KEHQPDSMATITMKPEYPPSEVYSTS 242
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 210 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 377
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+    +S  A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 244 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 155
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,316
Number of Sequences: 5004
Number of extensions: 62833
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)