Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M04
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     30   2.1  
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    30   2.8  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    29   4.9  
07_03_1450 + 26620178-26620456,26622122-26622775                       29   6.5  
12_02_1197 + 26915933-26916298                                         28   8.6  
03_05_0562 + 25648581-25648841,25650243-25650626                       28   8.6  
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497...    28   8.6  

>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 617 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLXRLDRCSNCLFSLTL 766
           T T  + ++ +R+T   R MR+L+  + +     +  L RC  CL  L L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379


>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
 Frame = +2

Query: 227 SIQHIRTAT-GLSAQGVNF-GPDREDCSTNSGRFLLHLGNLYIGFELGSSSFIMPSARAA 400
           +IQ +R    G S  G  F G      S+ SG+    L  +  G ++ SSS   PS +A 
Sbjct: 66  AIQEVRGVDEGGSGHGTGFDGLPLVSPSSKSGKLTSKLRQVTNGLKMKSSSRKAPSPQAQ 125

Query: 401 GCNARQRTRFGRQSLRK*CPGSG*AFATSKCPRFAWSTAHAVF 529
               R R R  R          G  F T+K     W+     F
Sbjct: 126 QSAKRVRKRLDRTKSSAAVALKGLQFVTAKVGNDGWAAVEKRF 168


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 201 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 287
           M P  PP  +++   PPP + H  +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 171 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 281
           H+ D+ A T T+    PPSE  +   PPPA     +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281


>07_03_1450 + 26620178-26620456,26622122-26622775
          Length = 310

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +3

Query: 231 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARSSCHQLEQLDAM 410
           +S   PPPAY H      + A  A  TV       G F+ A S         QL + +++
Sbjct: 148 FSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALS-----EDNRQLRRRNSL 202

Query: 411 LDKELALEGRAYGNDAL 461
           L  ELA   + Y ND +
Sbjct: 203 LLSELAHMKKLY-NDII 218


>12_02_1197 + 26915933-26916298
          Length = 121

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 250 GGSDVLYTSEGGYSGFIVIVAIESGW 173
           GG DVL  + GG    +++VA ES W
Sbjct: 3   GGEDVLVVAPGGGRDALLLVAQESAW 28


>03_05_0562 + 25648581-25648841,25650243-25650626
          Length = 214

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 577 RDWVVKMTAGSSQVTXEDSMGGTPCKAWAFASGKGSSAT 461
           RD VV +  G+   + +   GG    A A  SG GS+A+
Sbjct: 2   RDVVVAVGGGTKAASRQQGQGGVTLAAAAAGSGSGSAAS 40


>02_05_1006 +
           33448476-33448915,33449016-33449083,33449681-33449751,
           33449905-33450156,33450473-33450636,33450731-33450773,
           33451044-33451161,33451384-33451481,33451550-33451594
          Length = 432

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 194 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 114
           C H+ WL +  HH++ ILF+K  L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,051,371
Number of Sequences: 37544
Number of extensions: 473047
Number of successful extensions: 1368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)