Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.38 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    30   0.38 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.6  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   6.2  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    26   6.2  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   6.2  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   6.2  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   8.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   8.2  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    26   8.2  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 587 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGCGPRSAS 736
           +C G+     YGQ      C    S++S  AG N T+  A   C  +  S
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESCSKQDIS 351


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = -1

Query: 504 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 325
           +PS+ LS   +  +   +     T++  S K    T        A   P+N  T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376

Query: 324 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 208
            +    P T+  V + S  +T    +  +TPI +SS   S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 485 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 595
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
 Frame = -1

Query: 450 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 280
           L   C    + K +A +T  Q LSR+   H KN +     P    I  P++R    V+  
Sbjct: 95  LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153

Query: 279 SLTMVQFIRNATP---IPTSSRPR-SATTRLKKNSTY 181
              M ++ R+      IP S R   S T R    +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 166 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 279
           +E  E+    L+P  RAPRP+ S    S   E+ H  R
Sbjct: 77  DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 499 IHNALL-DALAVGEEEDADHHLHNDDHQQED 410
           +H+ +L D LA     D D  L  D+H Q+D
Sbjct: 56  LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 472 AVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDSK 296
           +V +E++ +  L  DD + +ED + D+ +  +       +E + E  +P+     + +S+
Sbjct: 46  SVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSKKNSR 105


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 466 GEEEDADHHLHNDDHQQEDCVRDDH 392
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 316 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 432
           L SRR  N + +V    WS+  E +H +  RNL   + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 378 RIAPQHPKNAITNITAPTTMKIHG 307
           RI P  P N + NIT P+T+  HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 457 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 320
           E+ +    N + Q+     DDH     +    SQE  HEH    D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 279 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 151
           SL + +F +  T +    +P S T  +  NS+ FTK  P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,983
Number of Sequences: 5004
Number of extensions: 58797
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)