Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M03
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    67   2e-13
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 66.9 bits (156), Expect = 2e-13
 Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 1/166 (0%)
 Frame = +2

Query: 155 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 334
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 335 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXFTYGESIKESIMDGVGVL 514
           ++FVI+F GCCGAIRESHCM +T+A                 F   ++  +     +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKN--DDNFRNISEK 118

Query: 515 FKKRSDANADEAAEAVFSE-LQRQFECCGNTGAINYGQFTLPESCC 649
           +++  +     +    F + +Q+  +CCG     +Y    +P SCC
Sbjct: 119 YQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC 164


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 518 KKRSDANADEAAEAVFSELQRQ 583
           +KR DA  DE+ EA+F  + RQ
Sbjct: 292 EKRDDAK-DESVEAIFQSILRQ 312


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 482 KESIMDGVGVLFKKRSDANADEAAEAVFSELQR 580
           K S+M   G+  +     + DE    VFS LQR
Sbjct: 96  KRSLMGAQGLSIRGLQINHEDETIRPVFSTLQR 128


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 77  AFSVHGVNTTQNLKEFPIV 21
           A S+ GVN+T   K FP +
Sbjct: 69  AGSIPGVNSTSENKTFPTI 87


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 77  AFSVHGVNTTQNLKEFPIV 21
           A S+ GVN+T   K FP +
Sbjct: 69  AGSIPGVNSTSENKTFPTI 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,323
Number of Sequences: 438
Number of extensions: 4367
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)