Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_M01
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1071 + 23753883-23754752                                         29   3.7  
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     28   8.5  

>07_03_1071 + 23753883-23754752
          Length = 289

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 631 GGXAPPXXXKKKKXGGGGXXKKXXP 705
           G  A P   KKK+ GGGG  KK  P
Sbjct: 14  GKAAAPEAKKKKQGGGGGGGKKENP 38


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 598 PPFXKKKXPPXGGXAPPXXXKKKKXGGG 681
           PPF ++  PP  G A P   K+   G G
Sbjct: 126 PPFLRQSRPPRRGAASPTRSKRDGSGSG 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,726,361
Number of Sequences: 37544
Number of extensions: 214437
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)