Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L23
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    47   4e-06
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    26   6.3  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   8.3  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 23/87 (26%), Positives = 47/87 (54%)
 Frame = +3

Query: 369 VVDGNDVLEFKLVRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQT 548
           V + N+ +E   +  V++   ++  + P   + +FG+ E I+GY DL++ + Y    +  
Sbjct: 8   VHNANECIE---IVQVNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITYECPLMVP 64

Query: 549 YLGIDYTDKIEPSKSEGMKADDVEGAL 629
            L I Y++++ P    G++  D+EG L
Sbjct: 65  KLEISYSERLAP--DSGVEPTDIEGTL 89


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 357 KHQSFCKINNGFCRSNSRV--NFIVNIFLILQKWRCVIYISIPIESKFCFTLLTAENL 190
           K  S C++++ +  S  +   +F    F++L+   C++   + I++  C T    ENL
Sbjct: 59  KFHSHCQLSSSYTNSGQKSFKSFNSLRFIVLKSKTCLLRYKLLIKTFCCITYSKIENL 116


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 283 FFNIAKMEVCNLHFNTDRKQILLYTSHCRKSS 188
           FF +  +      F TDR  + LY +H R+ S
Sbjct: 353 FFALILLRTAIFFFGTDRYSLPLYKTHARRFS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,764,804
Number of Sequences: 5004
Number of extensions: 83784
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)