Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L21
         (980 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    24   3.3  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   8.8  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   8.8  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   8.8  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 24.2 bits (50), Expect(2) = 3.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 649 PPPXXXPPXPGPP 687
           PPP   PP P PP
Sbjct: 660 PPPNIQPPVPHPP 672



 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 667 PPXPGPPGXPP 699
           PP PG PG PP
Sbjct: 707 PPPPGIPGYPP 717


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 428 PGKPGXRXPXGRXXXGGAMGGAXXXG 351
           PG+PG R P G+    GA GG    G
Sbjct: 214 PGQPGSRGPAGQPGKDGAQGGPGEKG 239


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
 Frame = +1

Query: 649 PPPXXXPPXPGPPGXPPXXRXXXXXXXXXXXXXXXXXXXXPP--GXFXPVGXFFSPAXPP 822
           PPP   PP P   G PP  R                    PP  G   P     SP  PP
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
 Frame = +1

Query: 649 PPPXXXPPXPGPPGXPPXXRXXXXXXXXXXXXXXXXXXXXPP--GXFXPVGXFFSPAXPP 822
           PPP   PP P   G PP  R                    PP  G   P     SP  PP
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
 Frame = +1

Query: 649 PPPXXXPPXPGPPGXPPXXRXXXXXXXXXXXXXXXXXXXXPP--GXFXPVGXFFSPAXPP 822
           PPP   PP P   G PP  R                    PP  G   P     SP  PP
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,919,702
Number of Sequences: 27780
Number of extensions: 160324
Number of successful extensions: 1667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)