Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L20
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    34   0.024
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    30   0.51 
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.89 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    29   1.2  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    28   2.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.3  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 335 CYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFK 460
           CY     +Y E   +K     NDD   +  FD AK  LK FK
Sbjct: 522 CYALASDQYPELPVIKAYQGCNDDWNIMDHFDFAKPELKMFK 563


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 272  FINYFQQQNILNCRSISGSRCCYQNLESKYSE-SQKVKILNVINDDSQTLSR 424
            FI   ++ NIL  R +S     +  LE KY+E  +K+ +L  + D  + LS+
Sbjct: 864  FIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSK 915


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 446 ILTLLYQTLTMFENHH*LHLVFSLFDFPSIYFPSFDNNIANHLLTYSSKYF 294
           I T ++    +FE HH L  + ++FD+     P     + N +L+ S K F
Sbjct: 286 IYTTVWLLQRLFEAHHSLDPLLTIFDYYLSVSPKDITRLTNAILSLSMKQF 336


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +2

Query: 350 ESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTD 529
           +S  SES  +  L+V  +  +T+S F +A+      K WKTSNG +    D+   E F  
Sbjct: 63  DSGVSESWVLDFLSVTGE--KTISEF-LAQ------KIWKTSNGDLNVAVDMYFDESFNI 113

Query: 530 KTAKKLCDS--ILNGPTEEVEQISNKIKGQILHPN 628
           K +    +S    +    +++Q+SN +  + L  N
Sbjct: 114 KNSNPDSESQKDTDASLTQMDQLSNTVSVKDLSIN 148


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 497 SDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISN-KIKGQILHPNLKESTIKDE 655
           S + LI+ +++K  KKL   +L  P+E   +I   ++  QI  P ++    K E
Sbjct: 93  SSVKLIQEYSEKVHKKLQAKLLENPSETSPEIERLQVLSQINLPEVRSKFHKKE 146


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +2

Query: 374 KVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTS 475
           K  + ++INDDS+ +++  ++K  + + K+ +TS
Sbjct: 196 KGTVTSIINDDSRNINKKTLSKQPVSEHKEKQTS 229


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 181  NVLMILPRVAVSKYVQPITTFLIHL 255
            N++   PR++V  +VQPIT  L+ +
Sbjct: 1214 NMVQSFPRLSVEAHVQPITRSLVRV 1238


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = +2

Query: 299 ILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFKQWKTSN 478
           +L C  I G   C     S YS  QK+ IL+ I   S   S+F+   +      Q    N
Sbjct: 582 LLTCLDICGPVICTNLFVSDYSMRQKILILSCI---SLAASKFNDDDNERLFPSQLLPGN 638

Query: 479 GQVKTLSDLPLIEGFTDKTAKKLCDSILN 565
              +  S  P IE  +D+  +KL   +++
Sbjct: 639 LHDQFYS--PTIEKISDELERKLVFPVMS 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,531
Number of Sequences: 5004
Number of extensions: 49852
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)