Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L20
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176...    29   6.6  
04_01_0288 + 3824337-3826385                                           29   6.6  
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150...    28   8.7  

>10_01_0154 -
           1764554-1764727,1764829-1764927,1765710-1766172,
           1766255-1766541
          Length = 340

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +2

Query: 260 TMVQFINYFQQQNILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAK 439
           T V  +  F +Q  + C ++ G      ++E     SQ +K+L + N      ++  I+ 
Sbjct: 128 TNVILMQGFFKQLEMGCPAMRGLFLDECSVEDVEISSQTLKVLTIKNTHVSYGNKTTIST 187

Query: 440 SRLKKFKQWKTSNGQVKTLSDLPLI 514
             +   K W   NG    L+D+PL+
Sbjct: 188 PSVTYLKLWSPLNG-TYVLNDMPLL 211


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 407 SQTLSRFDIAKSRLKKFKQWKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGP 571
           S  + ++++  S   K  +  TS+   KTL+DL  + GF D    + C S L  P
Sbjct: 381 SGRMGQYNMLHSCYHKITKATTSHHWFKTLNDLSTLVGFADWLDMQHCSSNLEIP 435


>01_05_0564 +
           23312419-23312987,23314652-23314751,23314832-23315055,
           23315212-23316041,23316161-23316275,23316786-23316905,
           23317410-23317450,23317546-23317595,23317684-23317719,
           23317836-23317856
          Length = 701

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = +2

Query: 464 WKTSNGQVKTLSDLPLIEGFTDKTAKKLCDSILNGPTEEVEQISNKIKGQILHPNLK 634
           +  S+GQ  T S +P  E   +K A    + I+N   EEV+Q  NK + QIL   L+
Sbjct: 639 YSRSSGQ--TSSSVPSRESIANKGASPPRNDIVN---EEVDQRQNKPRRQILRDELQ 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,235
Number of Sequences: 37544
Number of extensions: 239893
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)