Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L20
         (893 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    28   0.33 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.8  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   7.2  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   7.2  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +2

Query: 290 QQNILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKK 454
           Q  I    S + ++C  + L+++    + +KIL  +   S + S+ DIAK+ LKK
Sbjct: 348 QMYIYRGDSENAAQCFEKVLKAQPGNYETMKILGSLYATSSSQSKRDIAKNHLKK 402


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 119  TNVFALLTYIINIYKVQAC 175
            +N+F L  Y++ IYKV+ C
Sbjct: 1249 SNMFELSDYLVGIYKVKDC 1267


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 468 FHCLNFFNLDFAISNLDN 415
           FHC NF +LD A+ +  +
Sbjct: 368 FHCSNFISLDEAVCSFSS 385


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +2

Query: 290 QQNILNCRSISGSRCCYQNLESKYSESQKVKILNVINDDSQTLSRFDIAKSRLKKFK 460
           +  ILN   + G R   ++L S   +S    +LNV +   Q  +       R++K +
Sbjct: 62  ENEILNLLGLPGPRPAVRHLHSSVGKSAPQFLLNVYDQLQQEETDAPAGAGRIRKVR 118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,737
Number of Sequences: 2352
Number of extensions: 12160
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)