Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L16
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 176 4e-45
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 176 4e-45
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 47 4e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 2.0
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 28 2.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 4.6
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 6.1
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 8.0
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 8.0
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 8.0
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 176 bits (428), Expect = 4e-45
Identities = 78/99 (78%), Positives = 91/99 (91%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+++V G RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+D
Sbjct: 32 GAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKD 91
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 92 GVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +2
Query: 80 RGRGGSAGAKFRISLGLPVGAVINCADNTGGKE----SVCDRCPRYQRSPEQTAG 232
RGRG ++G K+R++LGLPV A++NCADN+G K SV R R P + G
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCG 57
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 176 bits (428), Expect = 4e-45
Identities = 78/99 (78%), Positives = 91/99 (91%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+++V G RLNRLPAA GDM++ATVKKGKP+LRKK+MPA+V+RQRK +RR+D
Sbjct: 32 GAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKD 91
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 92 GVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +2
Query: 80 RGRGGSAGAKFRISLGLPVGAVINCADNTGGKE----SVCDRCPRYQRSPEQTAG 232
RGRG ++G K+R++LGLPV A++NCADN+G K SV R R P + G
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCG 57
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 46.8 bits (106), Expect = 4e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Frame = +3
Query: 234 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 386
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 387 VNNKGEMKGSAITGPVAKE 443
VN + E G+ I VA E
Sbjct: 91 VNKECEPLGTRILSVVANE 109
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 150 TAPTTQGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRK 329
T PT KN + I + I+ + +P+A G I+ K G + ++P + RK
Sbjct: 47 TQPTKSALKNAHFITLTEIQKQC--IPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRK 104
Query: 330 PFRRRDGV 353
+ DG+
Sbjct: 105 KWTSLDGL 112
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -2
Query: 385 MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 206
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 205 IPWTA 191
P +A
Sbjct: 837 TPLSA 841
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 713 TCLLQLIMVTNKAIASQISQIKHFFH 636
+CL+ L TN I ++ KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 377
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 415 EPFISPLLLTMTPALSSKYINTPS 344
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 457 HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 305
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 463 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 326
R H+ AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 177 SLPPVLSAQLITAPTGRPREIRNFAPAEPPRP 82
SLPP++ L++ PT + ++ A PP P
Sbjct: 534 SLPPIVKPNLMSEPTPTNSDEKSHALGFPPPP 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,149
Number of Sequences: 5004
Number of extensions: 65472
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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