Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L16
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 184 1e-46
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 184 1e-46
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 184 1e-46
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 60 2e-09
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 33 0.30
03_05_0291 - 22837412-22838128 29 3.7
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 6.4
02_02_0500 - 10993675-10994067,10994434-10995738 29 6.4
11_01_0746 + 6294277-6294687 28 8.5
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 8.5
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 184 bits (447), Expect = 1e-46
Identities = 81/99 (81%), Positives = 95/99 (95%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGSAG KFR+SLGLPV A +NCADNTG K
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAK 35
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 184 bits (447), Expect = 1e-46
Identities = 81/99 (81%), Positives = 95/99 (95%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGSAG KFR+SLGLPV A +NCADNTG K
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAK 35
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 184 bits (447), Expect = 1e-46
Identities = 81/99 (81%), Positives = 95/99 (95%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+D
Sbjct: 50 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKD 109
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 110 GVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 58.4 bits (135), Expect = 7e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 83 GRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
GRGGSAG KFR+SLGLPV A +NCADNTG K
Sbjct: 22 GRGGSAGNKFRMSLGLPVAATVNCADNTGAK 52
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 60.5 bits (140), Expect = 2e-09
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVIRQRKPFR 338
GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+R
Sbjct: 65 GAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRG 118
Query: 339 RRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 443
R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 119 RNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/78 (26%), Positives = 29/78 (37%)
Frame = +2
Query: 80 RGRGGSAGAKFRISLGLPVGAVINCADNTGGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 259
RG GGS+ +GL + + N G C C RS GG + G + G
Sbjct: 177 RGHGGSSSIGSGSGVGLGATSGVGAGSNVGPSGG-CSTCGSGSRSGSGAGGGSYSGSNSG 235
Query: 260 HSQKG*T*TPEKGNAGSG 313
S + + GSG
Sbjct: 236 SSSSSGSGSNSNSIGGSG 253
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 478 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 365
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 383 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 246
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 6.4
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -2
Query: 427 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 260
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 259 ATIMSPEPAA 230
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>11_01_0746 + 6294277-6294687
Length = 136
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +2
Query: 134 VGAVINCADNTGGKESVCD----RCPRYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGN 301
+GA N DN GG+ + D R + T GG G + S+ G + P G
Sbjct: 23 LGAGSNRRDNRGGRIRLLDDVGGRRATTTKGAAATLGGNSTGEEAARSRSGASSRPTGGG 82
Query: 302 AGSG 313
G G
Sbjct: 83 VGKG 86
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 366 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 452
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,199,758
Number of Sequences: 37544
Number of extensions: 499957
Number of successful extensions: 1463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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