Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L16
(869 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 192 1e-48
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 192 1e-48
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 192 1e-48
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 192 1e-48
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 192 1e-48
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 192 1e-48
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 192 1e-48
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 192 1e-48
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 83 2e-15
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot... 33 1.8
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 192 bits (469), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 27 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 86
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 87 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 125
Score = 60.9 bits (141), Expect = 6e-09
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = +2
Query: 89 GGSAGAKFRISLGLPVGAVINCADNTGGK 175
GGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 GGSSGAKFRISLGLPVGAVINCADNTGAK 29
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 192 bits (468), Expect = 1e-48
Identities = 88/99 (88%), Positives = 96/99 (96%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
GVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 82.6 bits (195), Expect = 2e-15
Identities = 37/43 (86%), Positives = 42/43 (97%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK 296
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKK
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 71 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGK 175
MSKRGRGGS+GAKFRISLGLPVGAVINCADNTG K
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAK 35
>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain protein.
Length = 1798
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 137 GAVINCADNTGGKESVCDRC-PRYQRSPEQTAGGRFRGHDC 256
GA + C D+TGG+ C+RC + R P GG+ R C
Sbjct: 891 GACLGCRDHTGGEH--CERCIAGFHRDPRLPYGGQCRPCPC 929
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,965,545
Number of Sequences: 237096
Number of extensions: 2619267
Number of successful extensions: 5851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5851
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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