Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L16
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   182   4e-46
Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    29   4.3  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    29   4.3  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    29   5.7  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  182 bits (442), Expect = 4e-46
 Identities = 84/99 (84%), Positives = 91/99 (91%)
 Frame = +3

Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
           GAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+D
Sbjct: 33  GAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKD 92

Query: 348 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 464
           G FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93  GTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 38/61 (62%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
 Frame = +2

Query: 71  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGGKE----SVCDRCPRYQRSPEQTAGGR 238
           MSKRGRGG++GAKFRISLGLPVGAV+NCADNTG K     SV     R  R P    G  
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60

Query: 239 F 241
           F
Sbjct: 61  F 61


>Z81512-8|CAH19099.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 226 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKF*K 47
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S    
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLSLVVS 326

Query: 46  PKILRNS 26
            K+  +S
Sbjct: 327 EKVPHSS 333


>Z81512-7|CAD54133.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 226 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKF*K 47
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S    
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLSLVVS 321

Query: 46  PKILRNS 26
            K+  +S
Sbjct: 322 EKVPHSS 328


>AL033515-2|CAH19093.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 226 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKF*K 47
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S    
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLSLVVS 326

Query: 46  PKILRNS 26
            K+  +S
Sbjct: 327 EKVPHSS 333


>AL033515-1|CAD54179.1|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 226 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKF*K 47
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S    
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLSLVVS 321

Query: 46  PKILRNS 26
            K+  +S
Sbjct: 322 EKVPHSS 328


>AL033511-2|CAH19091.1|  509|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1b protein.
          Length = 509

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 226 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKF*K 47
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S    
Sbjct: 267 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLSLVVS 326

Query: 46  PKILRNS 26
            K+  +S
Sbjct: 327 EKVPHSS 333


>AL033511-1|CAA22072.2|  504|Caenorhabditis elegans Hypothetical
           protein Y44A6E.1a protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 226 SLFRRPLIPWTAITYRFFAPCVVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKF*K 47
           SL RRPL     +T+  +  C +  V   + + T G+ E R     T+ L   V+S    
Sbjct: 262 SLKRRPLFYMVTLTFPSYIMCAISVVGLFARFSTTGEREERFTLGVTAILTMAVLSLVVS 321

Query: 46  PKILRNS 26
            K+  +S
Sbjct: 322 EKVPHSS 328


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 VINCADNTGGKESVCDRC-PRYQRSPEQTAGGRFRGHDC-GHSQK 271
           V  C +N  G    C+ C P Y+R   Q  GGR    DC G+S++
Sbjct: 740 VCECPENFAGNS--CESCVPGYRRVNNQLYGGRCEKCDCHGNSEE 782


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 VINCADNTGGKESVCDRC-PRYQRSPEQTAGGRFRGHDC-GHSQK 271
           V  C +N  G    C+ C P Y+R   Q  GGR    DC G+S++
Sbjct: 740 VCECPENFAGNS--CESCVPGYRRVNNQLYGGRCEKCDCHGNSEE 782


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3102

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 143 VINCADNTGGKESVCDRC-PRYQRSPEQTAGGRFRGHDC-GHSQK 271
           V  C +N  G    C+ C P Y+R   Q  GGR    DC G+S++
Sbjct: 740 VCECPENFAGNS--CESCVPGYRRVNNQLYGGRCEKCDCHGNSEE 782


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 180 DSLPPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDI 70
           +SLPP  +  +   PT  PRE R     EP  P  ++
Sbjct: 874 ESLPPRETRPMRDGPTREPREFRGDRDREPREPFREV 910


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 389 DYDTRIVLKVYKYSITPSERFPL 321
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,812
Number of Sequences: 27780
Number of extensions: 400143
Number of successful extensions: 1005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)