Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L16
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    27   0.30 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 54  NFDTTKCL-REDVVVPRERNSVSPWVSQWEQ*STAPTTQGAKNLYVIAVQGIKGRLNRLP 230
           NF+T+  +  ++   P++ ++ +P VSQ     TAP  Q     YV    G + + + +P
Sbjct: 45  NFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIP 104

Query: 231 AA 236
            A
Sbjct: 105 TA 106


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -1

Query: 314 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 216
           D C  Y +    +T  DCG    P   +R   Q
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQ 503


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -1

Query: 314 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 216
           D C  Y +    +T  DCG    P   +R   Q
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQ 593


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 187 TYRFFAPCVVGAVDY 143
           T RF+  CVV A DY
Sbjct: 467 TTRFYTACVVEAFDY 481


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +3

Query: 126 VSQWEQ*STAPTTQGAKNL---YVIAVQGIKG 212
           V Q EQ   AP T G KN+   +++   GI G
Sbjct: 805 VQQCEQLEKAPNTLGLKNMAGVFIVVGVGIIG 836


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 238 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 336
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,865
Number of Sequences: 438
Number of extensions: 5148
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)