Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L14
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    54   3e-08
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    28   1.5  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.6  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    27   2.6  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   3.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   6.1  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   8.1  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 26/88 (29%), Positives = 47/88 (53%)
 Frame = +3

Query: 498 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRF 677
           ++  Q+ L  P +   IV  +   Q+ TV EVGPG G +T  ++ +A +K++ +E DPR 
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKA-RKVIAVEMDPRM 84

Query: 678 LPSLELLADACRDKVDVDIITGDILKTD 761
              +         +  + ++ GD++KTD
Sbjct: 85  AAEITKRVQGTPKEKKLQVVLGDVIKTD 112


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 570 QNHTVCEVGPGPGGITRSIIRQAPKKLVLIE 662
           +  T+ E+G G G +T  II   PK+++ ++
Sbjct: 36  ETSTILELGAGSGKLTPRIIASQPKEIIAVD 66


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 751 KISPVIMSTSTLSRQASAKSSNDGKNRGSFSIKTSFL 641
           K+SP I+    +    SA+SS+  ++  S  IKT FL
Sbjct: 549 KLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFL 585


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 582 VCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 689
           + E+G G G  T  II   PK+++ ++  P  L  L
Sbjct: 44  ILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDVL 79


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 542 QNSACLR*YSESYRL*SWTRPGWNN 616
           +NSAC R Y E+ R  SW+R   NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 STRSSAQAGRNSLYEINRREKSRTRSKITSD 271
           S R    A R++L + NR+ KS+ +  ITSD
Sbjct: 31  SRRKGKSALRSALEKKNRKSKSKPKVTITSD 61


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 495 LRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSI-IRQAPKK 647
           L EL+ N     R +D I R    +++  VC VG GP G++ +I I+Q   K
Sbjct: 71  LNELTDNL----RKLDTIER---EVEDVDVCIVGAGPAGLSAAIRIKQQAAK 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,514,087
Number of Sequences: 5004
Number of extensions: 73455
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)